This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298494 (68 seq.)
>W1710863646
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
566650
566574
-
Pro
CGG
[ENA]
¡û
>W1711384935
MEDO01000001
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
96312
96236
-
Pro
CGG
[ENA]
¡û
>W1711386588
MEFO01000019
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
217731
217655
-
Pro
CGG
[ENA]
¡û
>W1711386652
MEFP01000019
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
231625
231701
+
Pro
CGG
[ENA]
¡û
>W1711387183
MEGJ01000037
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
47265
47341
+
Pro
CGG
[ENA]
¡û
>W1711387207
MEGK01000009
Gammaproteobacteria
Rhodanobacter sp. SCN 66-43 [MEGK]
103888
103812
-
Pro
CGG
[ENA]
¡û
>W1711387509
MEGS01000013
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
141628
141704
+
Pro
CGG
[ENA]
¡û
>W1711424138
MIDV01000005
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
17424
17348
-
Pro
CGG
[ENA]
¡û
>W1711424193
MIDW01000028
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
15709
15633
-
Pro
CGG
[ENA]
¡û
>W1711503678
MKTU01000080
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
12440
12364
-
Pro
CGG
[ENA]
¡û
>W1711506082
MKWC01000004
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
370688
370612
-
Pro
CGG
[ENA]
¡û
>W1711506653
MKWP01000002
Gammaproteobacteria
Xanthomonadales bacterium 66-474 [MKWP]
276011
275935
-
Pro
CGG
[ENA]
¡û
>W1711506694
MKWQ01000005
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
286916
286992
+
Pro
CGG
[ENA]
¡û
>W1711751264
MUNP01000048
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
55629
55705
+
Pro
CGG
[ENA]
¡û
>W131222271
AUBD01000001
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
127551
127475
-
Pro
CGG
[ENA]
¡û
>W131227512
AUFF01000001
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
413180
413104
-
Pro
CGG
[ENA]
¡û
>W131230587
AUHT01000004
Gammaproteobacteria
Lysobacter defluvii DSM 18482 [AUHT]
4943
5019
+
Pro
CGG
[ENA]
¡û
>W131244893
CAQP01000159
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
5514
5438
-
Pro
CGG
[ENA]
¡û
>WENV180038946
LLBY010014559
[LLBY] soil metagenome; soil from tomato rhizosphere
1531
1607
+
Pro
CGG
[ENA]
¢þ
>WENV180291057
OBIV01002107
[OBIV] soil metagenome; Clay
146
222
+
Pro
CGG
[ENA]
¢þ
>WENV180297401
OBJA01028503
[OBJA] soil metagenome; sediment, water from around vicinity
146
222
+
Pro
CGG
[ENA]
¢þ
>WENV180691916
OCZS010264469
[OCZS] soil metagenome; soil
89
165
+
Pro
CGG
[ENA]
¢þ
>W141094196
AVCH01000002
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
50944
51020
+
Pro
CGG
[ENA]
¡û
>W141094286
AVCJ01000001
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
77094
77018
-
Pro
CGG
[ENA]
¡û
>W141094347
AVCK01000020
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
54247
54323
+
Pro
CGG
[ENA]
¡û
>WENV181190887
OEPS010006253
[OEPS] soil metagenome; soil
1342
1418
+
Pro
CGG
[ENA]
¢þ
>WENV181308004
OFIS01000096
[OFIS] sludge metagenome; sludge
22801
22725
-
Pro
CGG
[ENA]
¢þ
>WENV181401368
OFTX01000048
[OFTX] sludge metagenome; sludge
22772
22696
-
Pro
CGG
[ENA]
¢þ
>WENV181401680
OFTX01002582
[OFTX] sludge metagenome; sludge
3316
3240
-
Pro
CGG
[ENA]
¢þ
>WENV181402109
OFTY01000126
[OFTY] sludge metagenome; sludge
62012
62088
+
Pro
CGG
[ENA]
¢þ
>W141148255
AWXU01000036
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
14875
14799
-
Pro
CGG
[ENA]
¡û
>W141149604
AWZR01000003
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
72514
72590
+
Pro
CGG
[ENA]
¡û
>WENV183728906
PJTQ01001072
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
9002
9078
+
Pro
CGG
[ENA]
¢þ
>WENV183744373
PJUK01013689
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
424
500
+
Pro
CGG
[ENA]
¢þ
>WENV170018665
BBPD01000285
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
33304
33380
+
Pro
CGG
[ENA]
¢þ
>WENV170019734
BBPE01000356
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
41563
41639
+
Pro
CGG
[ENA]
¢þ
>WENV170574170
FLYM01010812
[FLYM] hot springs metagenome; Sediment
361
285
-
Pro
CGG
[ENA]
¢þ
>WENV170654619
JRYL01002254
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
17870
17946
+
Pro
CGG
[ENA]
¢þ
>WENV170712150
LNFM01010189
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13335
13259
-
Pro
CGG
[ENA]
¢þ
>WENV170712595
LNFM01015332
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5838
5914
+
Pro
CGG
[ENA]
¢þ
>WENV170712790
LNFM01017796
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18
94
+
Pro
CGG
[ENA]
¢þ
>WENV170714129
LNFM01056129
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2485
2561
+
Pro
CGG
[ENA]
¢þ
>C181185985
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
2384405
2384481
+
Pro
CGG
-
¡û
>C191139371
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1851941
1852017
+
Pro
CGG
-
¡û
>C191165676
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1755158
1755234
+
Pro
CGG
-
¡û
>C191189072
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
2325016
2325092
+
Pro
CGG
-
¡û
>W1910749852
MJEV01000068
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MJEV]
43408
43332
-
Pro
CGG
[ENA]
¡û
>W1910797087
MSPY01000007
Gammaproteobacteria
Oleiagrimonas sp. MCCC 1A03011 [MSPY]
26842
26766
-
Pro
CGG
[ENA]
¡û
>W1910821933
MWIO01000026
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
153896
153820
-
Pro
CGG
[ENA]
¡û
>W1910826181
MWQP01000003
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MWQP]
42019
41943
-
Pro
CGG
[ENA]
¡û
>W1911405218
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
950173
950097
-
Pro
CGG
[ENA]
¡û
>W1911770899
QXJI01000001
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
364006
363930
-
Pro
CGG
[ENA]
¡û
>W1810354864
PVLF01000024
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
480
404
-
Pro
CGG
[ENA]
¡û
>W1810692772
QLKV01000001
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
306896
306972
+
Pro
CGG
[ENA]
¡û
>W1810858455
QTJR01000017
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
61952
61876
-
Pro
CGG
[ENA]
¡û
>W1810914471
QVPD01000005
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
116699
116623
-
Pro
CGG
[ENA]
¡û
>W1510018850
BBUM02000173
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
3887
3811
-
Pro
CGG
[ENA]
¡û
>W1511352605
JROI01000010
Gammaproteobacteria
Oleiagrimonas soli 3.5X [JROI]
287589
287513
-
Pro
CGG
[ENA]
¡û
>C161085662
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2174714
2174638
-
Pro
CGG
[Ensembl]
¡û
>W1610026749
AVBH01000156
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
1351
1427
+
Pro
CGG
[ENA]
¡û
>W121071190
AJXS01000238
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
17620
17544
-
Pro
CGG
[ENA]
¡û
>W1610725992
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
566650
566574
-
Pro
CGG
[ENA]
¡û
>WENV077926
AAFX01127772
Soil microbial communities from Minnesota Farm
524
446
-
Pro
CGG
[ENA]
>W1710022798
AVBH01000156
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
1351
1427
+
Pro
CGG
[ENA]
¡û
>W1710513595
FNAG01000011
Gammaproteobacteria
Aquimonas voraii [FNAG]
85276
85200
-
Pro
CGG
[ENA]
¡û
>W1710567355
FOSR01000007
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
47747
47671
-
Pro
CGG
[ENA]
¡û
>W1710582991
FQUK01000033
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
1912
1836
-
Pro
CGG
[ENA]
¡û
>W1710601741
FUXP01000007
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
1041
965
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK