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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29851 (17 seq.)
>W131215971
ATVL01000007
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
524803
524890
+
Ser
CGA
[ENA]
¡û
>W1711767877
MVBC01000006
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
43731
43820
+
Ser
CGA
[ENA]
¡û
>C191183819
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
950181
950094
-
Ser
CGA
-
¡û
>W1910547405
FZNS01000005
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
383560
383647
+
Ser
CGA
[ENA]
¡û
>W1911788163
QYCN01000022
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
56004
55917
-
Ser
CGA
[ENA]
¡û
>W1810089869
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
667620
667707
+
Ser
CGA
[ENA]
¡û
>W1810625899
QHKM01000004
Bacteroidota
Hymenobacter edaphi NL [QHKM]
264303
264390
+
Ser
CGA
[ENA]
¡û
>W1810678971
QKNS01000004
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
14148
14061
-
Ser
CGA
[ENA]
¡û
>SRA1015166
SRR023845.483733
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
49
138
+
Ser
CGA
[SRA]
>C151009436
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
806755
806668
-
Ser
CGA
[Ensembl]
¡û
>C151017350
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
1036754
1036841
+
Ser
CGA
[Ensembl]
¡û
>C151063981
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
1437253
1437342
+
Ser
CGA
[Ensembl]
¡û
>C151096218
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2349438
2349349
-
Ser
CGA
-
¡û
>W1511543335
JZIR01000153
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
16226
16313
+
Ser
CGA
[ENA]
¡û
>W1710587471
FQYN01000004
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
141386
141299
-
Ser
CGA
[ENA]
¡û
>W1710590128
FRAS01000039
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
17443
17356
-
Ser
CGA
[ENA]
¡û
>W1710610153
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
2247125
2247038
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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