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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298510 (59 seq.)
>W1710867791
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W1710869864
LMKB01000001
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
129165
129240
+
Lys
TTT
[ENA]
¡û
>W1710872736
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
2217221
2217296
+
Lys
TTT
[ENA]
¡û
>W1710876070
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
737654
737727
+
Lys
TTT
[ENA]
¡û
>W1710876563
LMPI01000012
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
242017
242092
+
Lys
TTT
[ENA]
¡û
>W1710876666
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
238288
238363
+
Lys
TTT
[ENA]
¡û
>W131162268
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
786702
786777
+
Lys
TTT
[ENA]
¡û
>W131184646
ARTB01000003
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
1020685
1020610
-
Lys
TTT
[ENA]
¡û
>W1711386958
MEGA01000096
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
8418
8493
+
Lys
TTT
[ENA]
¡û
>W1711461516
MJGW01000002
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
18672
18747
+
Lys
TTT
[ENA]
¡û
>W1711502194
MKSL01000011
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
85956
85881
-
Lys
TTT
[ENA]
¡û
>W1711667020
MRDE01000026
Actinomycetota
Tersicoccus phoenicis [MRDE]
82348
82423
+
Lys
TTT
[ENA]
¡û
>W1711724729
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
1113383
1113458
+
Lys
TTT
[ENA]
¡û
>W1711961772
NCSR01000051
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
2043
2118
+
Lys
TTT
[ENA]
¡û
>C171111610
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1117269
1117194
-
Lys
TTT
-
¡û
>WENV180016184
FSUF01000001
[FSUF] metagenome; soil
22
96
+
Lys
TTT
[ENA]
¢þ
>WENV180016622
FSVO01000005
[FSVO] metagenome; soil
3082
3008
-
Lys
TTT
[ENA]
¢þ
>WENV180016968
FSWJ01000079
[FSWJ] metagenome; soil
6673
6747
+
Lys
TTT
[ENA]
¢þ
>WENV180018580
FSZS01000341
[FSZS] metagenome; soil
1789
1715
-
Lys
TTT
[ENA]
¢þ
>WENV180026415
FTIT01117634
[FTIT] metagenome; soil
76
2
-
Lys
TTT
[ENA]
¢þ
>WENV180028829
FTJH01054590
[FTJH] metagenome; soil
285
211
-
Lys
TTT
[ENA]
¢þ
>W141146501
AWVQ01000193
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
1997
1924
-
Lys
TTT
[ENA]
¡û
>WENV170010646
APMI01023742
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
14
89
+
Lys
TTT
[ENA]
¢þ
>WENV170223560
CEQD01208952
[CEQD] marine metagenome genome assembly TARA_042_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
200
275
+
Lys
TTT
[ENA]
¢þ
>WENV170841276
MDSZ01219645
[MDSZ] marine metagenome; seawater
2145
2070
-
Lys
TTT
[ENA]
¢þ
>C181196597
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
3299032
3299106
+
Lys
TTT
-
¡û
>C191101015
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2084805
2084730
-
Lys
TTT
-
¡û
>C191182573
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3178133
3178058
-
Lys
TTT
-
¡û
>W1810058235
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
2116966
2116892
-
Lys
TTT
[ENA]
¡û
>W1810277514
PSTX01000012
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
254066
253992
-
Lys
TTT
[ENA]
¡û
>W1810277566
PSTY01000020
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
253996
253922
-
Lys
TTT
[ENA]
¡û
>W1810277621
PSTZ01000009
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
7412
7339
-
Lys
TTT
[ENA]
¡û
>W1810282028
PSXX01000002
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
351234
351160
-
Lys
TTT
[ENA]
¡û
>W1810282126
PSXZ01000009
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
254066
253992
-
Lys
TTT
[ENA]
¡û
>W1810282179
PSYA01000010
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
1394897
1394823
-
Lys
TTT
[ENA]
¡û
>W1810282233
PSYB01000012
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
253708
253634
-
Lys
TTT
[ENA]
¡û
>W1810282285
PSYC01000029
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
76896
76822
-
Lys
TTT
[ENA]
¡û
>SRA1014667
SRR023845.251124
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
21
96
+
Lys
TTT
[SRA]
>W1511528868
JYIY01000037
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
2738
2663
-
Lys
TTT
[ENA]
¡û
>C161076851
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1363946
1364021
+
Lys
TTT
[Ensembl]
¡û
>W1610112239
CZJS01000101
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
79345
79270
-
Lys
TTT
[ENA]
¡û
>W1610112511
CZJX01000083
Actinomycetota
Kocuria varians [CZJX]
165
240
+
Lys
TTT
[ENA]
¡û
>W1610112551
CZJY01000070
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
43913
43838
-
Lys
TTT
[ENA]
¡û
>W1610620625
LHOZ01000080
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
98422
98497
+
Lys
TTT
[ENA]
¡û
>W1610730137
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W1610732210
LMKB01000001
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
129165
129240
+
Lys
TTT
[ENA]
¡û
>W1610735082
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
2217221
2217296
+
Lys
TTT
[ENA]
¡û
>W1610738416
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
737654
737727
+
Lys
TTT
[ENA]
¡û
>W1610738909
LMPI01000012
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
242017
242092
+
Lys
TTT
[ENA]
¡û
>W1610739012
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
238288
238363
+
Lys
TTT
[ENA]
¡û
>W1710114943
CZJS01000101
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
79345
79270
-
Lys
TTT
[ENA]
¡û
>W1710115215
CZJX01000083
Actinomycetota
Kocuria varians [CZJX]
165
240
+
Lys
TTT
[ENA]
¡û
>W1710115255
CZJY01000070
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
43913
43838
-
Lys
TTT
[ENA]
¡û
>W1710568289
FOTM01000019
Actinomycetota
Leifsonia sp. CL147 [FOTM]
37320
37245
-
Lys
TTT
[ENA]
¡û
>W1710603969
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1534640
1534567
-
Lys
TTT
[ENA]
¡û
>W1710604019
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
927613
927538
-
Lys
TTT
[ENA]
¡û
>W1710608077
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
268573
268498
-
Lys
TTT
[ENA]
¡û
>W1710609353
FXWJ01000004
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
101994
102069
+
Lys
TTT
[ENA]
¡û
>W1710748319
LHOZ01000080
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
98422
98497
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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