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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298620 (23 seq.)
>W131221720
AUAR01000011
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
72444
72519
+
Gly
TCC
[ENA]
¡û
>W131221731
AUAR01000014
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
742
667
-
Gly
TCC
[ENA]
¡û
>WENV181231056
OFEK01008863
[OFEK] activated sludge metagenome; Anaerobic digester
1790
1715
-
Gly
TCC
[ENA]
¢þ
>WENV181767087
OGQZ01016025
[OGQZ] human gut metagenome; faeces
2828
2753
-
Gly
TCC
[ENA]
¢þ
>WENV181910752
OGYC01046835
[OGYC] human gut metagenome; faeces
164
239
+
Gly
TCC
[ENA]
¢þ
>WENV182523897
OIWS01079959
[OIWS] human gut metagenome; faeces
254
329
+
Gly
TCC
[ENA]
¢þ
>WENV182711098
OJPD01004969
[OJPD] human gut metagenome; stool sample
2874
2799
-
Gly
TCC
[ENA]
¢þ
>WENV170011871
APMI01098226
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1738
1663
-
Gly
TCC
[ENA]
¢þ
>WENV170640634
JFJP01023704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
255
180
-
Gly
TCC
[ENA]
¢þ
>WENV170657630
JTFP01005602
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
978
1053
+
Gly
TCC
[ENA]
¢þ
>WENV170657654
JTFP01007023
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1449
1374
-
Gly
TCC
[ENA]
¢þ
>WENV170661429
JXWV01025412
[JXWV] soil metagenome; rice field; organic FYM Plot
394
469
+
Gly
TCC
[ENA]
¢þ
>WENV170689329
LFRM01288881
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
76
1
-
Gly
TCC
[ENA]
¢þ
>W09108793
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
1019108
1019033
-
Gly
TCC
[ENA]
¡û
>W09108826
ABTP01000007
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
95645
95720
+
Gly
TCC
[ENA]
¡û
>C141005261
CP006585
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [CP006585]
1883322
1883397
+
Gly
TCC
[Ensembl]
¡û
>C10104947
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
1068398
1068473
+
Gly
TCC
[Ensembl]
¡û
>C10104978
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
3169633
3169558
-
Gly
TCC
[Ensembl]
¡û
>C161069030
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
2122710
2122785
+
Gly
TCC
[Ensembl]
¡û
>C161069068
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
243388
243313
-
Gly
TCC
[Ensembl]
¡û
>W1710566387
FORX01000028
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
582
507
-
Gly
TCC
[ENA]
¡û
>W1710568360
FOTO01000003
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
209472
209547
+
Gly
TCC
[ENA]
¡û
>W1710568376
FOTO01000007
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
64550
64475
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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