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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298661 (34 seq.)
>W1711361085
MDKE01000041
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
11834
11758
-
Met
CAT
[ENA]
¡û
>W131045325
AMRI01000039
Gammaproteobacteria
Gallaecimonas xiamenensis 3-C-1 [AMRI]
91
167
+
Met
CAT
[ENA]
¡û
>W131180099
ARMW01000024
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
189443
189519
+
Met
CAT
[ENA]
¡û
>W131180102
ARMW01000024
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
189843
189919
+
Met
CAT
[ENA]
¡û
>C171118260
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
1369940
1370016
+
Met
CAT
-
¡û
>C171118263
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
1370365
1370441
+
Met
CAT
-
¡û
>WENV180294010
OBIY01009356
[OBIY] beach sand metagenome; beach sand
1072
996
-
Met
CAT
[ENA]
¢þ
>WENV170016177
AZIJ01014587
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
2326
2402
+
Met
CAT
[ENA]
¢þ
>C181012430
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2913156
2913232
+
Met
CAT
-
¡û
>C181012433
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2913627
2913703
+
Met
CAT
-
¡û
>C181200234
CP031416
Gammaproteobacteria
Gallaecimonas mangrovi HK-28 [CP031416]
2717689
2717765
+
Met
CAT
-
¡û
>C181200237
CP031416
Gammaproteobacteria
Gallaecimonas mangrovi HK-28 [CP031416]
2718033
2718109
+
Met
CAT
-
¡û
>W1910784567
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35001
35077
+
Met
CAT
[ENA]
¡û
>W1910784570
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35391
35467
+
Met
CAT
[ENA]
¡û
>W1910852615
NBIM01000002
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
12968
12892
-
Met
CAT
[ENA]
¡û
>W1910852618
NBIM01000002
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
12552
12476
-
Met
CAT
[ENA]
¡û
>W1911075392
NMUO01000040
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
8450
8526
+
Met
CAT
[ENA]
¡û
>W1911075395
NMUO01000040
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
8921
8997
+
Met
CAT
[ENA]
¡û
>W1911174127
NQJF01000001
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
339018
339094
+
Met
CAT
[ENA]
¡û
>W1911174130
NQJF01000001
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
339352
339428
+
Met
CAT
[ENA]
¡û
>W1911585092
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
325539
325463
-
Met
CAT
[ENA]
¡û
>W1810390150
PXYG01000005
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
194241
194165
-
Met
CAT
[ENA]
¡û
>W1810390153
PXYG01000005
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
193768
193692
-
Met
CAT
[ENA]
¡û
>W1810390200
PXYH01000005
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
120510
120434
-
Met
CAT
[ENA]
¡û
>W1810390203
PXYH01000005
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
120043
119967
-
Met
CAT
[ENA]
¡û
>W1810471860
QAGM01000008
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
34726
34650
-
Met
CAT
[ENA]
¡û
>W1810471863
QAGM01000008
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
34385
34309
-
Met
CAT
[ENA]
¡û
>W1810533052
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1678011
1678087
+
Met
CAT
[ENA]
¡û
>W1810533055
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1678426
1678502
+
Met
CAT
[ENA]
¡û
>W1511688088
LFWC01000019
Gammaproteobacteria
Gallaecimonas pentaromativorans YA_1 [LFWC]
22533
22457
-
Met
CAT
[ENA]
¡û
>W1511688091
LFWC01000019
Gammaproteobacteria
Gallaecimonas pentaromativorans YA_1 [LFWC]
22187
22111
-
Met
CAT
[ENA]
¡û
>C121007377
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
1346506
1346430
-
Met
CAT
[Ensembl]
¡û
>C121007380
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
1346018
1345942
-
Met
CAT
[Ensembl]
¡û
>W1710541395
FNYH01000005
Gammaproteobacteria
Allopseudospirillum japonicum [FNYH]
7917
7841
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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