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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298662 (121 seq.)
>W1711057457
LRWE01000014
Gammaproteobacteria
Escherichia coli [LRWE]
134403
134476
+
Arg
ACG
[ENA]
¡û
>W1711090589
LTAV01000020
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
447
371
-
Arg
ACG
[ENA]
¡û
>W1711090607
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5793
5717
-
Arg
ACG
[ENA]
¡û
>W1711090608
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5691
5615
-
Arg
ACG
[ENA]
¡û
>W1711090609
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5589
5513
-
Arg
ACG
[ENA]
¡û
>W1711090610
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5487
5411
-
Arg
ACG
[ENA]
¡û
>W1711090611
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5385
5309
-
Arg
ACG
[ENA]
¡û
>W1711124632
LUKI01000002
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
100671
100595
-
Arg
ACG
[ENA]
¡û
>W1711124640
LUKI01000008
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
3329
3405
+
Arg
ACG
[ENA]
¡û
>W1711361063
MDKE01000011
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
216231
216155
-
Arg
ACG
[ENA]
¡û
>W1711678762
MRUL01000024
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
42762
42838
+
Arg
ACG
[ENA]
¡û
>W1711678763
MRUL01000024
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
42883
42959
+
Arg
ACG
[ENA]
¡û
>W1711843581
MXZU01000070
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Saintpaul [MXZU]
17203
17276
+
Arg
ACG
[ENA]
¡û
>W1711854248
MYFZ01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Gaminara [MYFZ]
351109
351182
+
Arg
ACG
[ENA]
¡û
>W131180115
ARMW01000027
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
120293
120369
+
Arg
ACG
[ENA]
¡û
>W131180116
ARMW01000027
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
120395
120471
+
Arg
ACG
[ENA]
¡û
>W131180117
ARMW01000027
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
120497
120573
+
Arg
ACG
[ENA]
¡û
>WENV170014353
AYRE01005787
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
162
238
+
Arg
ACG
[ENA]
¢þ
>WENV170015914
AZIJ01004146
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
23
99
+
Arg
ACG
[ENA]
¢þ
>C181012456
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3358721
3358645
-
Arg
ACG
-
¡û
>C181012457
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3358616
3358540
-
Arg
ACG
-
¡û
>C181012458
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3358518
3358442
-
Arg
ACG
-
¡û
>C181142366
CP026831
Gammaproteobacteria
Shigella dysenteriae ATCC 12039 [CP026831]
800075
800151
+
Arg
ACG
-
¡û
>C191120584
CP034162
Gammaproteobacteria
Escherichia albertii 06-3542 [CP034162]
11375
11451
+
Arg
ACG
-
¡û
>C191120753
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
1353079
1353003
-
Arg
ACG
-
¡û
>W1910462934
FWPT01000022
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
2208
2132
-
Arg
ACG
[ENA]
¡û
>W1910536584
FZGQ01000013
Gammaproteobacteria
Escherichia coli [FZGQ]
30770
30695
-
Arg
ACG
[ENA]
¡û
>W1910588624
JZMP01000015
Gammaproteobacteria
Escherichia coli HT2012EP01 [JZMP]
73001
72925
-
Arg
ACG
[ENA]
¡û
>W1910760332
MNCH01000021
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
41262
41338
+
Arg
ACG
[ENA]
¡û
>W1910760333
MNCH01000021
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
41382
41458
+
Arg
ACG
[ENA]
¡û
>W1910760334
MNCH01000021
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
41572
41648
+
Arg
ACG
[ENA]
¡û
>W1910760811
MNKW01000017
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
41262
41338
+
Arg
ACG
[ENA]
¡û
>W1910760812
MNKW01000017
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
41382
41458
+
Arg
ACG
[ENA]
¡û
>W1910760813
MNKW01000017
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
41572
41648
+
Arg
ACG
[ENA]
¡û
>W1910760884
MNKX01000015
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
41262
41338
+
Arg
ACG
[ENA]
¡û
>W1910760885
MNKX01000015
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
41382
41458
+
Arg
ACG
[ENA]
¡û
>W1910760886
MNKX01000015
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
41572
41648
+
Arg
ACG
[ENA]
¡û
>W1910760959
MNKY01000018
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
41262
41338
+
Arg
ACG
[ENA]
¡û
>W1910760960
MNKY01000018
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
41382
41458
+
Arg
ACG
[ENA]
¡û
>W1910760961
MNKY01000018
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
41572
41648
+
Arg
ACG
[ENA]
¡û
>W1910768741
MOMA01000020
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
41401
41477
+
Arg
ACG
[ENA]
¡û
>W1910768742
MOMA01000020
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
41521
41597
+
Arg
ACG
[ENA]
¡û
>W1910768743
MOMA01000020
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
41711
41787
+
Arg
ACG
[ENA]
¡û
>W1910768824
MOMB01000055
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
41323
41399
+
Arg
ACG
[ENA]
¡û
>W1910768825
MOMB01000055
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
41443
41519
+
Arg
ACG
[ENA]
¡û
>W1910768826
MOMB01000055
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
41633
41709
+
Arg
ACG
[ENA]
¡û
>W1910784548
MPZM01000015
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
36488
36412
-
Arg
ACG
[ENA]
¡û
>W1910784549
MPZM01000015
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
36371
36295
-
Arg
ACG
[ENA]
¡û
>W1910784550
MPZM01000015
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
36269
36193
-
Arg
ACG
[ENA]
¡û
>W1910784552
MPZM01000015
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
36036
35960
-
Arg
ACG
[ENA]
¡û
>W1910804013
MTCI01000018
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
41262
41338
+
Arg
ACG
[ENA]
¡û
>W1910804014
MTCI01000018
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
41382
41458
+
Arg
ACG
[ENA]
¡û
>W1910804015
MTCI01000018
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
41572
41648
+
Arg
ACG
[ENA]
¡û
>W1910852596
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
1844359
1844283
-
Arg
ACG
[ENA]
¡û
>W1910852597
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
1844257
1844181
-
Arg
ACG
[ENA]
¡û
>W1910852598
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
1844155
1844079
-
Arg
ACG
[ENA]
¡û
>W1910918761
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
282804
282728
-
Arg
ACG
[ENA]
¡û
>W1910918762
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
282640
282564
-
Arg
ACG
[ENA]
¡û
>W1910918763
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
282476
282400
-
Arg
ACG
[ENA]
¡û
>W1910918764
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
282312
282236
-
Arg
ACG
[ENA]
¡û
>W1910932751
NITZ01000013
Gammaproteobacteria
Xenorhabdus miraniensis DSM 17902 [NITZ]
90832
90756
-
Arg
ACG
[ENA]
¡û
>W1910942226
NJGH01000018
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
26685
26609
-
Arg
ACG
[ENA]
¡û
>W1910942227
NJGH01000018
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
26521
26445
-
Arg
ACG
[ENA]
¡û
>W1910942228
NJGH01000018
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
26357
26281
-
Arg
ACG
[ENA]
¡û
>W1910942229
NJGH01000018
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
26193
26117
-
Arg
ACG
[ENA]
¡û
>W1911067757
NMNM01000022
Gammaproteobacteria
Escherichia coli MOD1-EC6918 [NMNM]
31278
31202
-
Arg
ACG
[ENA]
¡û
>W1911075416
NMUO01000071
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
18222
18298
+
Arg
ACG
[ENA]
¡û
>W1911075417
NMUO01000071
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
18327
18403
+
Arg
ACG
[ENA]
¡û
>W1911075418
NMUO01000071
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
18425
18501
+
Arg
ACG
[ENA]
¡û
>W1911174142
NQJF01000003
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
73560
73484
-
Arg
ACG
[ENA]
¡û
>W1911174143
NQJF01000003
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
73458
73382
-
Arg
ACG
[ENA]
¡û
>W1911174144
NQJF01000003
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
73356
73280
-
Arg
ACG
[ENA]
¡û
>W1810390123
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
601056
600980
-
Arg
ACG
[ENA]
¡û
>W1810390124
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
600952
600876
-
Arg
ACG
[ENA]
¡û
>W1810390125
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
600848
600772
-
Arg
ACG
[ENA]
¡û
>W1810390207
PXYH01000006
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
25442
25518
+
Arg
ACG
[ENA]
¡û
>W1810390208
PXYH01000006
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
25547
25623
+
Arg
ACG
[ENA]
¡û
>W1810390209
PXYH01000006
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
25648
25724
+
Arg
ACG
[ENA]
¡û
>W1810471820
QAGM01000002
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
119314
119238
-
Arg
ACG
[ENA]
¡û
>W1810471821
QAGM01000002
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
119212
119136
-
Arg
ACG
[ENA]
¡û
>W1810471822
QAGM01000002
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
119110
119034
-
Arg
ACG
[ENA]
¡û
>W1810533063
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
2366983
2366907
-
Arg
ACG
[ENA]
¡û
>W1810533064
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
2366874
2366798
-
Arg
ACG
[ENA]
¡û
>W1810533065
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
2366761
2366685
-
Arg
ACG
[ENA]
¡û
>W1810784337
QRAP01000013
Gammaproteobacteria
Enterobacillus tribolii DSM 103736 [QRAP]
37227
37151
-
Arg
ACG
[ENA]
¡û
>W1810784338
QRAP01000013
Gammaproteobacteria
Enterobacillus tribolii DSM 103736 [QRAP]
37099
37023
-
Arg
ACG
[ENA]
¡û
>W1810784339
QRAP01000013
Gammaproteobacteria
Enterobacillus tribolii DSM 103736 [QRAP]
36916
36840
-
Arg
ACG
[ENA]
¡û
>W1810861705
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1211060
1211136
+
Arg
ACG
[ENA]
¡û
>W1810861706
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1211224
1211300
+
Arg
ACG
[ENA]
¡û
>W1810861707
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1211388
1211464
+
Arg
ACG
[ENA]
¡û
>W1810861708
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1211552
1211628
+
Arg
ACG
[ENA]
¡û
>W1810861709
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1211716
1211792
+
Arg
ACG
[ENA]
¡û
>W1810861710
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1211880
1211956
+
Arg
ACG
[ENA]
¡û
>W1810861711
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1212044
1212120
+
Arg
ACG
[ENA]
¡û
>W1810861712
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1212208
1212284
+
Arg
ACG
[ENA]
¡û
>W1810861713
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1212372
1212448
+
Arg
ACG
[ENA]
¡û
>W1810861714
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
1212536
1212612
+
Arg
ACG
[ENA]
¡û
>C11114641
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
803910
803986
+
Arg
ACG
[Ensembl]
¡û
>C11114642
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
804053
804129
+
Arg
ACG
[Ensembl]
¡û
>C11114643
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
804160
804236
+
Arg
ACG
[Ensembl]
¡û
>C121007350
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
3286133
3286057
-
Arg
ACG
[Ensembl]
¡û
>C121007351
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
3286032
3285956
-
Arg
ACG
[Ensembl]
¡û
>C121007352
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
3285932
3285856
-
Arg
ACG
[Ensembl]
¡û
>W1610055508
BBVP01000017
Gammaproteobacteria
Escherichia albertii [BBVP]
69956
70032
+
Arg
ACG
[ENA]
¡û
>W1610503835
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
91776
91852
+
Arg
ACG
[ENA]
¡û
>W1610503836
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
91878
91954
+
Arg
ACG
[ENA]
¡û
>W1610898503
LRWE01000014
Gammaproteobacteria
Escherichia coli [LRWE]
134403
134476
+
Arg
ACG
[ENA]
¡û
>W1610924829
LTAV01000020
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
447
371
-
Arg
ACG
[ENA]
¡û
>W1610924847
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5793
5717
-
Arg
ACG
[ENA]
¡û
>W1610924848
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5691
5615
-
Arg
ACG
[ENA]
¡û
>W1610924849
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5589
5513
-
Arg
ACG
[ENA]
¡û
>W1610924850
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5487
5411
-
Arg
ACG
[ENA]
¡û
>W1610924851
LTAV01000036
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
5385
5309
-
Arg
ACG
[ENA]
¡û
>W1610935604
LUKI01000002
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
100671
100595
-
Arg
ACG
[ENA]
¡û
>W1610935612
LUKI01000008
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
3329
3405
+
Arg
ACG
[ENA]
¡û
>W1730036550
MXJJ01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar 4 [MXJJ]
558959
559032
+
Arg
ACG
[ENA]
¡û
>W1710052207
BBVP01000017
Gammaproteobacteria
Escherichia albertii [BBVP]
69956
70032
+
Arg
ACG
[ENA]
¡û
>W1710496664
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
91776
91852
+
Arg
ACG
[ENA]
¡û
>W1710496665
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
91878
91954
+
Arg
ACG
[ENA]
¡û
>W1710570355
FOVC01000002
Gammaproteobacteria
Izhakiella capsodis [FOVC]
439895
439971
+
Arg
ACG
[ENA]
¡û
>W1710570356
FOVC01000002
Gammaproteobacteria
Izhakiella capsodis [FOVC]
440168
440244
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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