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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29869 (66 seq.)
>W1710796581
LJSF01000025
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
35724
35813
+
Ser
GGA
[ENA]
¡û
>W1710991293
LPXO01000011
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
149630
149719
+
Ser
GGA
[ENA]
¡û
>W1711282609
LZNT01000105
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
6740
6829
+
Ser
GGA
[ENA]
¡û
>W1711642929
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
493813
493724
-
Ser
GGA
[ENA]
¡û
>W1711643108
MPZW01000003
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
3128
3039
-
Ser
GGA
[ENA]
¡û
>W1712106672
NIVZ01000003
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
220801
220890
+
Ser
GGA
[ENA]
¡û
>W1712106734
NIWA01000008
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
1528
1439
-
Ser
GGA
[ENA]
¡û
>W1712106774
NIWB01000007
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
1080
991
-
Ser
GGA
[ENA]
¡û
>W1712106811
NIWC01000002
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
435057
434968
-
Ser
GGA
[ENA]
¡û
>C171033711
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
1125040
1124951
-
Ser
GGA
-
¡û
>C171035425
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
1887499
1887588
+
Ser
GGA
-
¡û
>W131050062
AMWC01000894
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
1029
940
-
Ser
GGA
[ENA]
¡û
>W131183076
ARRM01000084
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
19027
19116
+
Ser
GGA
[ENA]
¡û
>w023612
AAYA01000001
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
265389
265298
-
Ser
GGA
[ENA]
¡û
>w018811
AATQ01000011
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
127585
127494
-
Ser
GGA
[ENA]
¡û
>w014836
AAOT01000003
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
95211
95302
+
Ser
GGA
[ENA]
¡û
>w012549
AAMO01000012
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
65780
65689
-
Ser
GGA
[ENA]
¡û
>W141064441
APVH01000046
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
19124
19213
+
Ser
GGA
[ENA]
¡û
>W141065755
AQQW01000010
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
201538
201627
+
Ser
GGA
[ENA]
¡û
>W141065849
AQRC01000002
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
177013
176924
-
Ser
GGA
[ENA]
¡û
>W141082579
AUND01000001
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
576941
577030
+
Ser
GGA
[ENA]
¡û
>WENV181233851
OFET01000149
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
52146
52057
-
Ser
GGA
[ENA]
¢þ
>WENV181234646
OFEU01000916
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
3118
3207
+
Ser
GGA
[ENA]
¢þ
>W141142909
AWRV01000311
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
366
277
-
Ser
GGA
[ENA]
¡û
>W141284601
JALZ01000004
Alphaproteobacteria
Roseivivax halodurans JCM 10272 [JALZ]
225872
225961
+
Ser
GGA
[ENA]
¡û
>W141284802
JAME01000003
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
207973
208062
+
Ser
GGA
[ENA]
¡û
>WENV183717024
PDWJ01000385
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
64979
65068
+
Ser
GGA
[ENA]
¢þ
>WENV170704933
LLEN01018465
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
105
194
+
Ser
GGA
[ENA]
¢þ
>WENV170942820
MDTG01385070
[MDTG] marine metagenome; seawater
55749
55838
+
Ser
GGA
[ENA]
¢þ
>C181054581
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
2628891
2628802
-
Ser
GGA
-
¡û
>C181068127
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
1906333
1906244
-
Ser
GGA
-
¡û
>C181117198
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1546308
1546219
-
Ser
GGA
-
¡û
>W141531729
JHEH01000038
Alphaproteobacteria
Thioclava dalianensis [JHEH]
26215
26304
+
Ser
GGA
[ENA]
¡û
>W09132554
ACNW01000103
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
67987
68076
+
Ser
GGA
[ENA]
¡û
>W141813535
JQEY01000001
Alphaproteobacteria
Palleronia rufa MOLA 401 [JQEY]
63598
63687
+
Ser
GGA
[ENA]
¡û
>W1910442672
FWFK01000003
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
429185
429096
-
Ser
GGA
[ENA]
¡û
>W1910443173
FWFV01000010
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
32236
32147
-
Ser
GGA
[ENA]
¡û
>W1910499015
FXXP01000001
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
128617
128528
-
Ser
GGA
[ENA]
¡û
>W1910499866
FXYH01000005
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
167439
167528
+
Ser
GGA
[ENA]
¡û
>W1910548441
FZON01000003
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
36607
36518
-
Ser
GGA
[ENA]
¡û
>W1911281170
NTHN01000240
Alphaproteobacteria
Alloyangia mangrovi SAOS 153D [NTHN]
499
410
-
Ser
GGA
[ENA]
¡û
>W1911539791
ONZF01000012
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
97654
97743
+
Ser
GGA
[ENA]
¡û
>W1810477625
QAOY01000007
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
1450
1361
-
Ser
GGA
[ENA]
¡û
>W1810503975
QBKN01000051
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
6269
6358
+
Ser
GGA
[ENA]
¡û
>W1810676756
QKMF01000005
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
167407
167496
+
Ser
GGA
[ENA]
¡û
>W1511387338
JSUQ01000010
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
224717
224806
+
Ser
GGA
[ENA]
¡û
>W1610018453
AQQX01000006
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
145916
146005
+
Ser
GGA
[ENA]
¡û
>W1610092906
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
204188
204099
-
Ser
GGA
[ENA]
¡û
>WENV070232
AACY023802361
Marine microbial communities from Global Ocean Sampling (GOS)
587
678
+
Ser
GGA
[ENA]
>WENV070633
AACY023816882
Marine microbial communities from Global Ocean Sampling (GOS)
946
1037
+
Ser
GGA
[ENA]
>W1610660538
LJSF01000025
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
35724
35813
+
Ser
GGA
[ENA]
¡û
>W1610845965
LPXO01000011
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
149630
149719
+
Ser
GGA
[ENA]
¡û
>W1710015669
AQQX01000006
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
145916
146005
+
Ser
GGA
[ENA]
¡û
>W1710096161
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
204188
204099
-
Ser
GGA
[ENA]
¡û
>W1710512344
FMZI01000008
Alphaproteobacteria
Mameliella alba [FMZI]
1766
1677
-
Ser
GGA
[ENA]
¡û
>W1710514272
FNAV01000003
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
433289
433378
+
Ser
GGA
[ENA]
¡û
>W1710516260
FNCL01000026
Alphaproteobacteria
Alloyangia pacifica [FNCL]
1991
1902
-
Ser
GGA
[ENA]
¡û
>W1710530963
FNPF01000028
Alphaproteobacteria
Citreimonas salinaria [FNPF]
22045
22134
+
Ser
GGA
[ENA]
¡û
>W1710539010
FNUZ01000002
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
865906
865817
-
Ser
GGA
[ENA]
¡û
>W1710541191
FNYD01000001
Alphaproteobacteria
Cribrihabitans marinus [FNYD]
123879
123790
-
Ser
GGA
[ENA]
¡û
>W1710543830
FOAI01000006
Alphaproteobacteria
Roseivivax marinus [FOAI]
256186
256097
-
Ser
GGA
[ENA]
¡û
>W1710558260
FOLR01000021
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
1143
1054
-
Ser
GGA
[ENA]
¡û
>W1710558453
FOLX01000001
Alphaproteobacteria
Pseudooceanicola nitratireducens [FOLX]
1825374
1825463
+
Ser
GGA
[ENA]
¡û
>W1710559526
FOMS01000001
Alphaproteobacteria
Roseivivax sediminis [FOMS]
48353
48264
-
Ser
GGA
[ENA]
¡û
>W1710562828
FOPF01000011
Alphaproteobacteria
Palleronia marisminoris [FOPF]
32390
32301
-
Ser
GGA
[ENA]
¡û
>W1710573868
FOXV01000003
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
388143
388054
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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