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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299116 (131 seq.)
>W1711084293
LSVP01000023
Actinomycetota
Corynebacterium belfantii bv. belfanti [LSVP]
156590
156665
+
Thr
TGT
[ENA]
¡û
>W1711084347
LSVQ01000035
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSVQ]
3798
3723
-
Thr
TGT
[ENA]
¡û
>W1711084959
LSWC01000034
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWC]
156790
156865
+
Thr
TGT
[ENA]
¡û
>W1711084987
LSWD01000006
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWD]
78930
79005
+
Thr
TGT
[ENA]
¡û
>W1711085116
LSWF01000039
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWF]
23450
23375
-
Thr
TGT
[ENA]
¡û
>W1711085165
LSWG01000042
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWG]
26563
26638
+
Thr
TGT
[ENA]
¡û
>W1711085527
LSWO01000017
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSWO]
64177
64252
+
Thr
TGT
[ENA]
¡û
>W1711085600
LSWP01000043
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWP]
156472
156547
+
Thr
TGT
[ENA]
¡û
>W1711085889
LSWV01000012
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSWV]
156652
156727
+
Thr
TGT
[ENA]
¡û
>W1711085950
LSWW01000023
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWW]
156707
156782
+
Thr
TGT
[ENA]
¡û
>W1711086138
LSXA01000012
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSXA]
23277
23202
-
Thr
TGT
[ENA]
¡û
>W1711086233
LSXC01000003
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSXC]
23034
22959
-
Thr
TGT
[ENA]
¡û
>W1711086361
LSXE01000036
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSXE]
101497
101572
+
Thr
TGT
[ENA]
¡û
>W1711086506
LSXH01000023
Actinomycetota
Corynebacterium belfantii bv. belfanti [LSXH]
156643
156718
+
Thr
TGT
[ENA]
¡û
>W1711086782
LSXM01000046
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSXM]
46975
46900
-
Thr
TGT
[ENA]
¡û
>W1711086843
LSXO01000012
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSXO]
101367
101442
+
Thr
TGT
[ENA]
¡û
>W1711087020
LSXR01000022
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSXR]
63591
63516
-
Thr
TGT
[ENA]
¡û
>W1711087618
LSYD01000012
Actinomycetota
Corynebacterium belfantii bv. belfanti [LSYD]
156685
156760
+
Thr
TGT
[ENA]
¡û
>W1711087739
LSYF01000038
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSYF]
63256
63181
-
Thr
TGT
[ENA]
¡û
>W1711087941
LSYJ01000023
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSYJ]
63256
63181
-
Thr
TGT
[ENA]
¡û
>W1711088118
LSYN01000005
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSYN]
26657
26732
+
Thr
TGT
[ENA]
¡û
>W1711092416
LTEB01000036
Actinomycetota
Corynebacterium simulans [LTEB]
37432
37357
-
Thr
TGT
[ENA]
¡û
>W1711094310
LTFV01000002
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
104323
104398
+
Thr
TGT
[ENA]
¡û
>W1711094374
LTFW01000048
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
59835
59760
-
Thr
TGT
[ENA]
¡û
>W1711094935
LTGK01000007
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
104084
104159
+
Thr
TGT
[ENA]
¡û
>W1711095292
LTGR01000022
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
100208
100283
+
Thr
TGT
[ENA]
¡û
>W1711098701
LTJU01000114
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
53601
53526
-
Thr
TGT
[ENA]
¡û
>W1711106015
LTRK01000030
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
53166
53091
-
Thr
TGT
[ENA]
¡û
>W1711106055
LTRL01000007
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
16189
16114
-
Thr
TGT
[ENA]
¡û
>W1711109802
LTUY01000066
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
17666
17741
+
Thr
TGT
[ENA]
¡û
>W1711110616
LTVS01000015
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
26985
26910
-
Thr
TGT
[ENA]
¡û
>W1711110862
LTVX01000141
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
1129
1054
-
Thr
TGT
[ENA]
¡û
>W1711110958
LTWA01000025
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
61317
61242
-
Thr
TGT
[ENA]
¡û
>W1711112400
LTXJ01000062
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
52974
52899
-
Thr
TGT
[ENA]
¡û
>W1711112886
LTXU01000101
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
26034
25959
-
Thr
TGT
[ENA]
¡û
>W1711185950
LWNV01000004
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
2408
2483
+
Thr
TGT
[ENA]
¡û
>W1711186301
LWOC01000036
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
2665
2740
+
Thr
TGT
[ENA]
¡û
>W1711186372
LWOE01000013
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
2588
2663
+
Thr
TGT
[ENA]
¡û
>W1711186580
LWOI01000054
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
21011
20936
-
Thr
TGT
[ENA]
¡û
>W1711186682
LWOK01000021
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
100937
101012
+
Thr
TGT
[ENA]
¡û
>W1711187690
LWPR01000034
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
47702
47627
-
Thr
TGT
[ENA]
¡û
>W1711435457
MINZ01000022
Actinomycetota
Corynebacterium diphtheriae [MINZ]
47994
47919
-
Thr
TGT
[ENA]
¡û
>W1711435676
MIOD01000028
Actinomycetota
Corynebacterium diphtheriae [MIOD]
72311
72386
+
Thr
TGT
[ENA]
¡û
>W1711435813
MIOG01000010
Actinomycetota
Corynebacterium diphtheriae [MIOG]
3810
3735
-
Thr
TGT
[ENA]
¡û
>W1711435915
MIOI01000012
Actinomycetota
Corynebacterium diphtheriae [MIOI]
48041
47966
-
Thr
TGT
[ENA]
¡û
>W1711436025
MIOK01000025
Actinomycetota
Corynebacterium diphtheriae [MIOK]
20341
20266
-
Thr
TGT
[ENA]
¡û
>W1711436103
MIOL01000075
Actinomycetota
Corynebacterium diphtheriae [MIOL]
20316
20241
-
Thr
TGT
[ENA]
¡û
>W1711436278
MIOP01000008
Actinomycetota
Corynebacterium diphtheriae [MIOP]
42399
42474
+
Thr
TGT
[ENA]
¡û
>W1711453754
MIYO01000014
Actinomycetota
Corynebacterium diphtheriae [MIYO]
23529
23604
+
Thr
TGT
[ENA]
¡û
>W1711453821
MIYP01000100
Actinomycetota
Corynebacterium diphtheriae [MIYP]
3809
3734
-
Thr
TGT
[ENA]
¡û
>W1711453879
MIYQ01000078
Actinomycetota
Corynebacterium diphtheriae [MIYQ]
12695
12770
+
Thr
TGT
[ENA]
¡û
>W1711456343
MJAQ01000055
Actinomycetota
Corynebacterium diphtheriae [MJAQ]
60282
60207
-
Thr
TGT
[ENA]
¡û
>W1711456399
MJAR01000071
Actinomycetota
Corynebacterium diphtheriae [MJAR]
60277
60202
-
Thr
TGT
[ENA]
¡û
>W1711692495
MSGA01000002
Actinomycetota
Corynebacterium diphtheriae [MSGA]
115355
115430
+
Thr
TGT
[ENA]
¡û
>W1711708000
MSSZ01000006
Actinomycetota
Corynebacterium diphtheriae [MSSZ]
60273
60198
-
Thr
TGT
[ENA]
¡û
>W1711708037
MSTA01000003
Actinomycetota
Corynebacterium diphtheriae [MSTA]
80892
80967
+
Thr
TGT
[ENA]
¡û
>W1711724644
MTQJ01000008
Actinomycetota
Corynebacterium diphtheriae [MTQJ]
23436
23361
-
Thr
TGT
[ENA]
¡û
>W1712077686
NGUZ01000004
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
9800
9725
-
Thr
TGT
[ENA]
¡û
>W131159330
AQUY01000003
Actinomycetota
Corynebacterium ulceribovis DSM 45146 [AQUY]
63561
63486
-
Thr
TGT
[ENA]
¡û
>WENV180557030
OCJU01001978
[OCJU] human gut metagenome; Infant 2 DOL 12 skin
164
237
+
Thr
TGT
[ENA]
¢þ
>WENV180711424
ODFN01005791
[ODFN] human metagenome; G_DNA_Anterior nares
213
286
+
Thr
TGT
[ENA]
¢þ
>WENV180749627
ODHQ01003465
[ODHQ] human metagenome; G_DNA_Anterior nares
244
317
+
Thr
TGT
[ENA]
¢þ
>WENV180765683
ODIC01027910
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
279
206
-
Thr
TGT
[ENA]
¢þ
>WENV180766252
ODIE01000419
[ODIE] human metagenome; G_DNA_Anterior nares
4573
4500
-
Thr
TGT
[ENA]
¢þ
>WENV180844775
ODKO01003703
[ODKO] human metagenome; G_DNA_Anterior nares
621
694
+
Thr
TGT
[ENA]
¢þ
>WENV180914500
ODSX01001722
[ODSX] human metagenome; G_DNA_Anterior nares
110
37
-
Thr
TGT
[ENA]
¢þ
>WENV180972558
ODUV01011010
[ODUV] human metagenome; G_DNA_Anterior nares
162
235
+
Thr
TGT
[ENA]
¢þ
>WENV181012971
ODWL01002601
[ODWL] human metagenome; G_DNA_Anterior nares
181
254
+
Thr
TGT
[ENA]
¢þ
>WENV181025091
ODWY01006058
[ODWY] human metagenome; G_DNA_Anterior nares
360
287
-
Thr
TGT
[ENA]
¢þ
>WENV181040321
ODXR01000013
[ODXR] human metagenome; G_DNA_Anterior nares
35654
35727
+
Thr
TGT
[ENA]
¢þ
>WENV181131816
OEGD01065685
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
94
21
-
Thr
TGT
[ENA]
¢þ
>WENV181212206
OFBN01000068
[OFBN] metagenome; hydrothermal vent
5046
5119
+
Thr
TGT
[ENA]
¢þ
>WENV181212380
OFBP01000175
[OFBP] metagenome; hydrothermal vent
648
721
+
Thr
TGT
[ENA]
¢þ
>WENV181212459
OFBQ01000189
[OFBQ] metagenome; hydrothermal vent
148
221
+
Thr
TGT
[ENA]
¢þ
>WENV181212548
OFBR01000302
[OFBR] metagenome; hydrothermal vent
648
721
+
Thr
TGT
[ENA]
¢þ
>WENV181212601
OFBS01000165
[OFBS] metagenome; hydrothermal vent
648
721
+
Thr
TGT
[ENA]
¢þ
>WENV181326264
OFLL01000031
[OFLL] metagenome; faeces
103908
103981
+
Thr
TGT
[ENA]
¢þ
>W141154946
AXLO01000006
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
61409
61334
-
Thr
TGT
[ENA]
¡û
>W141155122
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
890699
890624
-
Thr
TGT
[ENA]
¡û
>W141155262
AXLV01000003
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
105400
105475
+
Thr
TGT
[ENA]
¡û
>W141155296
AXLW01000001
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
54642
54567
-
Thr
TGT
[ENA]
¡û
>W141155440
AXLY01000009
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
65481
65406
-
Thr
TGT
[ENA]
¡û
>W141155637
AXMC01000015
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
63831
63756
-
Thr
TGT
[ENA]
¡û
>WENV181814541
OGTG01002300
[OGTG] human gut metagenome; fecal sample 1 from infant 4
569
642
+
Thr
TGT
[ENA]
¢þ
>WENV182623798
OJKN01007688
[OJKN] metagenome; surface
413
340
-
Thr
TGT
[ENA]
¢þ
>WENV182629293
OJKS01000031
[OJKS] metagenome; surface
21102
21029
-
Thr
TGT
[ENA]
¢þ
>WENV182629607
OJKT01004208
[OJKT] metagenome; surface
470
397
-
Thr
TGT
[ENA]
¢þ
>WENV182629770
OJKU01005513
[OJKU] metagenome; surface
384
311
-
Thr
TGT
[ENA]
¢þ
>WENV182629809
OJKV01000014
[OJKV] metagenome; surface
40
113
+
Thr
TGT
[ENA]
¢þ
>WENV182636219
OJKZ01001036
[OJKZ] metagenome; surface
1302
1229
-
Thr
TGT
[ENA]
¢þ
>WENV182640331
OJLB01003552
[OJLB] metagenome; surface
2531
2458
-
Thr
TGT
[ENA]
¢þ
>WENV182640785
OJLD01002048
[OJLD] metagenome; surface
435
362
-
Thr
TGT
[ENA]
¢þ
>WENV182640814
OJLE01000016
[OJLE] metagenome; surface
44035
43962
-
Thr
TGT
[ENA]
¢þ
>WENV182641839
OJLK01002681
[OJLK] metagenome; surface
174
101
-
Thr
TGT
[ENA]
¢þ
>WENV182642360
OJLM01002593
[OJLM] metagenome; surface
1333
1260
-
Thr
TGT
[ENA]
¢þ
>WENV182642740
OJLP01000072
[OJLP] metagenome; surface
7892
7819
-
Thr
TGT
[ENA]
¢þ
>WENV182643289
OJLU01000260
[OJLU] metagenome; surface
1868
1941
+
Thr
TGT
[ENA]
¢þ
>WENV182643939
OJLW01003588
[OJLW] metagenome; surface
2562
2489
-
Thr
TGT
[ENA]
¢þ
>WENV182644016
OJLW01005177
[OJLW] metagenome; surface
2559
2486
-
Thr
TGT
[ENA]
¢þ
>WENV182644889
OJLY01000628
[OJLY] metagenome; surface
10937
11010
+
Thr
TGT
[ENA]
¢þ
>WENV182645300
OJLY01008279
[OJLY] metagenome; surface
1333
1406
+
Thr
TGT
[ENA]
¢þ
>WENV182646330
OJMA01002311
[OJMA] metagenome; surface
457
530
+
Thr
TGT
[ENA]
¢þ
>WENV182671883
OJNM01007383
[OJNM] metagenome; surface
1370
1297
-
Thr
TGT
[ENA]
¢þ
>WENV182812167
OJXQ01000504
[OJXQ] human gut metagenome; human gut
930
1003
+
Thr
TGT
[ENA]
¢þ
>WENV182828894
OKDK01000705
[OKDK] human gut metagenome; human gut
525
452
-
Thr
TGT
[ENA]
¢þ
>WENV182829066
OKDM01000018
[OKDM] human gut metagenome; human gut
51143
51216
+
Thr
TGT
[ENA]
¢þ
>WENV182855550
OKNB01000269
[OKNB] human gut metagenome; human gut
304
377
+
Thr
TGT
[ENA]
¢þ
>WENV183063502
OLIG01000579
[OLIG] metagenome; surface
124
51
-
Thr
TGT
[ENA]
¢þ
>WENV183083765
OLJD01001949
[OLJD] human gut metagenome; human gut
173
100
-
Thr
TGT
[ENA]
¢þ
>WENV170718421
LSQX01074930
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1543
1470
-
Thr
TGT
[ENA]
¢þ
>C181214794
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
430326
430399
+
Thr
TGT
-
¡û
>W09127840
ACLH01000049
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
39483
39558
+
Thr
TGT
[ENA]
¡û
>C191207676
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
2502764
2502691
-
Thr
TGT
-
¡û
>C191210957
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
2003611
2003538
-
Thr
TGT
-
¡û
>W1910182625
BJNB01000004
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
97625
97698
+
Thr
TGT
[ENA]
¡û
>W1911596624
PNHI01000001
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
272620
272693
+
Thr
TGT
[ENA]
¡û
>W1810187559
PKHR01000003
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
66273
66200
-
Thr
TGT
[ENA]
¡û
>C151012242
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2293845
2293770
-
Thr
TGT
[Ensembl]
¡û
>C151073128
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
2388126
2388051
-
Thr
TGT
[Ensembl]
¡û
>W10127226
AEED01000136
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
8829
8754
-
Thr
TGT
[ENA]
¡û
>W1510769708
JAQN01000026
Actinomycetota
Corynebacterium diphtheriae bv. gravis str. ISS 4060 [JAQN]
62965
62890
-
Thr
TGT
[ENA]
¡û
>W1511356957
JRUZ01000009
Actinomycetota
Corynebacterium diphtheriae HC07 [JRUZ]
63746
63671
-
Thr
TGT
[ENA]
¡û
>W1511438544
JUMN01000028
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
105985
106060
+
Thr
TGT
[ENA]
¡û
>W1511472657
JVZP01000051
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
14528
14453
-
Thr
TGT
[ENA]
¡û
>W1511473131
JWAB01001449
Actinomycetota
Corynebacterium aurimucosum 118_CAUR [JWAB]
15980
15905
-
Thr
TGT
[ENA]
¡û
>W11134714
AEED01000136
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
8829
8754
-
Thr
TGT
[ENA]
¡û
>C161074777
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
1906060
1906135
+
Thr
TGT
[Ensembl]
¡û
>C161074835
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
1945283
1945358
+
Thr
TGT
-
¡û
>W1610068160
BCRC01000009
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
60316
60391
+
Thr
TGT
[ENA]
¡û
>W1610926454
LTEB01000036
Actinomycetota
Corynebacterium simulans [LTEB]
37432
37357
-
Thr
TGT
[ENA]
¡û
>W1710065533
BCRC01000009
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
60316
60391
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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