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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299284 (18 seq.)
>W131176087
ARJT01000032
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
85162
85086
-
Pro
TGG
[ENA]
¡û
>W131176091
ARJT01000032
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
84690
84614
-
Pro
TGG
[ENA]
¡û
>W1711357728
MDHN01000039
Gammaproteobacteria
Alteromonas confluentis [MDHN]
20476
20552
+
Pro
TGG
[ENA]
¡û
>W1711690185
MSEI01000006
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
187889
187965
+
Pro
TGG
[ENA]
¡û
>W1711690189
MSEI01000006
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
188370
188446
+
Pro
TGG
[ENA]
¡û
>WENV170859459
MDTB01036577
[MDTB] marine metagenome; seawater
124
48
-
Pro
TGG
[ENA]
¢þ
>C191073134
CP031010
Gammaproteobacteria
Alteromonas sp. RKMC-009 [CP031010]
3232051
3231975
-
Pro
TGG
-
¡û
>C191073137
CP031010
Gammaproteobacteria
Alteromonas sp. RKMC-009 [CP031010]
3231627
3231551
-
Pro
TGG
-
¡û
>C191080021
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2999877
2999801
-
Pro
TGG
-
¡û
>C191080025
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2999391
2999315
-
Pro
TGG
-
¡û
>C191152352
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
1405847
1405923
+
Pro
TGG
-
¡û
>C191152356
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
1406332
1406408
+
Pro
TGG
-
¡û
>C191172219
CP039852
Gammaproteobacteria
Salinimonas iocasae KX18D6 [CP039852]
1291928
1292004
+
Pro
TGG
-
¡û
>C191172223
CP039852
Gammaproteobacteria
Salinimonas iocasae KX18D6 [CP039852]
1292393
1292469
+
Pro
TGG
-
¡û
>W1910899125
NGFM01000037
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [NGFM]
9931
9855
-
Pro
TGG
[ENA]
¡û
>W1910899129
NGFM01000037
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [NGFM]
9450
9374
-
Pro
TGG
[ENA]
¡û
>W1810426132
PYVY01000002
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
223355
223431
+
Pro
TGG
[ENA]
¡û
>W1810426136
PYVY01000002
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
223841
223917
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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