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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29932 (52 seq.)
>W1710934474
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
229068
228979
-
Ser
TGA
[ENA]
¡û
>W1710934496
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
52140
52229
+
Ser
TGA
[ENA]
¡û
>W1711147353
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
1096319
1096230
-
Ser
TGA
[ENA]
¡û
>W1711149062
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
743356
743267
-
Ser
TGA
[ENA]
¡û
>W1711149098
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
799642
799553
-
Ser
TGA
[ENA]
¡û
>W1711149135
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
535599
535510
-
Ser
TGA
[ENA]
¡û
>W1711149172
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1260165
1260076
-
Ser
TGA
[ENA]
¡û
>W1711272426
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
494367
494278
-
Ser
TGA
[ENA]
¡û
>W1711282010
LZMQ01000009
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
10565
10654
+
Ser
TGA
[ENA]
¡û
>W1711282039
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
653601
653512
-
Ser
TGA
[ENA]
¡û
>W1711421591
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
170270
170359
+
Ser
TGA
[ENA]
¡û
>W1711625786
MPIY01000007
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
87872
87783
-
Ser
TGA
[ENA]
¡û
>W1711932812
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
957388
957299
-
Ser
TGA
[ENA]
¡û
>W1712077038
NGUO01000011
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
76334
76423
+
Ser
TGA
[ENA]
¡û
>W1712077072
NGUP01000004
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
28864
28775
-
Ser
TGA
[ENA]
¡û
>C171035127
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1248267
1248178
-
Ser
TGA
-
¡û
>C171035165
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1267100
1267011
-
Ser
TGA
-
¡û
>C171035203
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1216177
1216088
-
Ser
TGA
-
¡û
>C017394
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1096319
1096230
-
Ser
TGA
[Ensembl]
¡û
>WENV180391073
OBPM01006461
[OBPM] marine metagenome; ENVO:00002010
174
263
+
Ser
TGA
[ENA]
¢þ
>C08007616
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
678447
678536
+
Ser
TGA
[Ensembl]
¡û
>WENV170599469
FUWD010075699
[FUWD] metagenome; unknown
111
200
+
Ser
TGA
[ENA]
¢þ
>WENV170600280
FUWD010117858
[FUWD] metagenome; unknown
465
554
+
Ser
TGA
[ENA]
¢þ
>WENV170602775
FUWD010263201
[FUWD] metagenome; unknown
321
232
-
Ser
TGA
[ENA]
¢þ
>WENV170617636
FUWD012932904
[FUWD] metagenome; unknown
323
234
-
Ser
TGA
[ENA]
¢þ
>WENV170625301
FUWD013195595
[FUWD] metagenome; unknown
99
10
-
Ser
TGA
[ENA]
¢þ
>WENV170633541
FUWD013398366
[FUWD] metagenome; unknown
99
10
-
Ser
TGA
[ENA]
¢þ
>C181187689
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1025368
1025279
-
Ser
TGA
-
¡û
>C181218867
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
617361
617450
+
Ser
TGA
-
¡û
>C181218902
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
348931
349020
+
Ser
TGA
-
¡û
>C181218977
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
540358
540447
+
Ser
TGA
-
¡û
>C181219064
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1632573
1632484
-
Ser
TGA
-
¡û
>C181219107
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
739645
739556
-
Ser
TGA
-
¡û
>W09106281
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
225327
225238
-
Ser
TGA
[ENA]
¡û
>W09107511
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
915101
915012
-
Ser
TGA
[ENA]
¡û
>C141003790
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
693314
693403
+
Ser
TGA
[Ensembl]
¡û
>W1911490759
OANS01000004
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
280607
280696
+
Ser
TGA
[ENA]
¡û
>W1810102021
PGTX01000008
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
16413
16324
-
Ser
TGA
[ENA]
¡û
>SRA1004774
SRR006906.133464
metagenomic water samples (SRP000427)
134
45
-
Ser
TGA
[SRA]
>W1810699146
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1468949
1468860
-
Ser
TGA
[ENA]
¡û
>W1810699193
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
732299
732210
-
Ser
TGA
[ENA]
¡û
>C151025644
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
698984
699073
+
Ser
TGA
[Ensembl]
¡û
>WENV045261
AACY022500419
Marine microbial communities from Global Ocean Sampling (GOS)
224
313
+
Ser
TGA
[ENA]
>C161092392
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1146206
1146117
-
Ser
TGA
[Ensembl]
¡û
>WENV057840
AACY023308391
Marine microbial communities from Global Ocean Sampling (GOS)
648
559
-
Ser
TGA
[ENA]
>WENV058373
AACY023326812
Marine microbial communities from Global Ocean Sampling (GOS)
1322
1411
+
Ser
TGA
[ENA]
>WENV058510
AACY023331552
Marine microbial communities from Global Ocean Sampling (GOS)
779
690
-
Ser
TGA
[ENA]
>WENV058712
AACY023339291
Marine microbial communities from Global Ocean Sampling (GOS)
289
198
-
Ser
TGA
[ENA]
>WENV058940
AACY023347737
Marine microbial communities from Global Ocean Sampling (GOS)
177
88
-
Ser
TGA
[ENA]
>WENV074509
AACY023980128
Marine microbial communities from Global Ocean Sampling (GOS)
87
176
+
Ser
TGA
[ENA]
>W1610792005
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
229068
228979
-
Ser
TGA
[ENA]
¡û
>W1610792027
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
52140
52229
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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