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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299717 (20 seq.)
>C008050
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
341793
341869
+
Ile
GAT
[Ensembl]
¡û
>C008054
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
827691
827767
+
Ile
GAT
[Ensembl]
¡û
>C008058
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
960987
961063
+
Ile
GAT
[Ensembl]
¡û
>C008082
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3358673
3358597
-
Ile
GAT
[Ensembl]
¡û
>C008084
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3172079
3172003
-
Ile
GAT
[Ensembl]
¡û
>C008116
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
107515
107591
+
Ile
GAT
[Ensembl]
¡û
>C008118
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
296511
296587
+
Ile
GAT
[Ensembl]
¡û
>C008151
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
3250534
3250458
-
Ile
GAT
[Ensembl]
¡û
>C008155
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2696140
2696064
-
Ile
GAT
[Ensembl]
¡û
>C008159
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2562741
2562665
-
Ile
GAT
[Ensembl]
¡û
>W09106219
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
133907
133831
-
Ile
GAT
[ENA]
¡û
>W09106223
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
611
535
-
Ile
GAT
[ENA]
¡û
>W09134103
ACQX01000066
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
1537
1613
+
Ile
GAT
[ENA]
¡û
>W1910182306
BJMT01000023
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
1713
1789
+
Ile
GAT
[ENA]
¡û
>C11107417
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
149468
149544
+
Ile
GAT
[Ensembl]
¡û
>C11107419
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
301076
301152
+
Ile
GAT
[Ensembl]
¡û
>C11107459
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
3253673
3253597
-
Ile
GAT
[Ensembl]
¡û
>C11107463
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2699661
2699585
-
Ile
GAT
[Ensembl]
¡û
>C11107467
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2566262
2566186
-
Ile
GAT
[Ensembl]
¡û
>ENV001359
AY780592
Environmental sample from ENV division of INSDC
57
133
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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