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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299821 (80 seq.)
>W1711326722
MBFW01000063
Gammaproteobacteria
Shewanella algae [MBFW]
66906
66831
-
Glu
TTC
[ENA]
¡û
>W1711326727
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
966
891
-
Glu
TTC
[ENA]
¡û
>W1711326728
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
678
603
-
Glu
TTC
[ENA]
¡û
>W1711326729
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
541
466
-
Glu
TTC
[ENA]
¡û
>W1711326731
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
318
243
-
Glu
TTC
[ENA]
¡û
>W1711326732
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
182
107
-
Glu
TTC
[ENA]
¡û
>W141227985
BALO01000063
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
11040
11115
+
Glu
TTC
[ENA]
¡û
>W141227986
BALO01000063
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
11328
11403
+
Glu
TTC
[ENA]
¡û
>WENV170420000
CEUM01233177
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
73
148
+
Glu
TTC
[ENA]
¢þ
>WENV170441818
CEUV01290739
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
752
827
+
Glu
TTC
[ENA]
¢þ
>WENV170476111
CEVI01072961
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1027
952
-
Glu
TTC
[ENA]
¢þ
>WENV170658526
JTFP01133560
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
169
244
+
Glu
TTC
[ENA]
¢þ
>WENV170893830
MDTD01056973
[MDTD] marine metagenome; seawater
16791
16866
+
Glu
TTC
[ENA]
¢þ
>WENV170908084
MDTE01060249
[MDTE] marine metagenome; seawater
60056
59981
-
Glu
TTC
[ENA]
¢þ
>WENV170908086
MDTE01060249
[MDTE] marine metagenome; seawater
59755
59680
-
Glu
TTC
[ENA]
¢þ
>WENV170908090
MDTE01060249
[MDTE] marine metagenome; seawater
45288
45213
-
Glu
TTC
[ENA]
¢þ
>WENV170914634
MDTE01151323
[MDTE] marine metagenome; seawater
4167
4240
+
Glu
TTC
[ENA]
¢þ
>C191017633
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216611
2216536
-
Glu
TTC
-
¡û
>C191017634
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216479
2216404
-
Glu
TTC
-
¡û
>C191017635
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216347
2216272
-
Glu
TTC
-
¡û
>C191017636
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216109
2216034
-
Glu
TTC
-
¡û
>C191017638
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2215886
2215811
-
Glu
TTC
-
¡û
>C191017640
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2215586
2215511
-
Glu
TTC
-
¡û
>C191017642
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2215286
2215211
-
Glu
TTC
-
¡û
>W09102831
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16655
16580
-
Glu
TTC
[ENA]
¡û
>W09102832
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16543
16468
-
Glu
TTC
[ENA]
¡û
>W09102833
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16304
16229
-
Glu
TTC
[ENA]
¡û
>W09102834
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16192
16117
-
Glu
TTC
[ENA]
¡û
>W09102836
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
15969
15894
-
Glu
TTC
[ENA]
¡û
>W09102838
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
15669
15594
-
Glu
TTC
[ENA]
¡û
>W09102840
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
15446
15371
-
Glu
TTC
[ENA]
¡û
>W141801995
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122502
122427
-
Glu
TTC
[ENA]
¡û
>W141801996
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122388
122313
-
Glu
TTC
[ENA]
¡û
>W141801997
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122274
122199
-
Glu
TTC
[ENA]
¡û
>W141801998
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122160
122085
-
Glu
TTC
[ENA]
¡û
>W141801999
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122046
121971
-
Glu
TTC
[ENA]
¡û
>W141802000
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121932
121857
-
Glu
TTC
[ENA]
¡û
>W141802001
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121818
121743
-
Glu
TTC
[ENA]
¡û
>W141802002
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121678
121603
-
Glu
TTC
[ENA]
¡û
>W141802003
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121564
121489
-
Glu
TTC
[ENA]
¡û
>W141802005
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121344
121269
-
Glu
TTC
[ENA]
¡û
>W1910645114
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
159298
159373
+
Glu
TTC
[ENA]
¡û
>W1910645293
LVDU01000007
Gammaproteobacteria
Shewanella algae YHL [LVDU]
199954
199879
-
Glu
TTC
[ENA]
¡û
>W1910905595
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
217990
218065
+
Glu
TTC
[ENA]
¡û
>W1910905596
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218127
218202
+
Glu
TTC
[ENA]
¡û
>W1910905597
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218264
218339
+
Glu
TTC
[ENA]
¡û
>W1910905599
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218488
218563
+
Glu
TTC
[ENA]
¡û
>W1910905600
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218626
218701
+
Glu
TTC
[ENA]
¡û
>W1910927023
NIJK01000005
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
341
266
-
Glu
TTC
[ENA]
¡û
>W1910927024
NIJK01000005
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
205
130
-
Glu
TTC
[ENA]
¡û
>W1910927223
NIJL01000043
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
614
539
-
Glu
TTC
[ENA]
¡û
>W1910927224
NIJL01000043
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
478
403
-
Glu
TTC
[ENA]
¡û
>W1910927225
NIJL01000043
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
342
267
-
Glu
TTC
[ENA]
¡û
>WENV026903
AACY021004205
Marine microbial communities from Global Ocean Sampling (GOS)
219
296
+
Glu
TTC
[ENA]
>W1810671709
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
19556
19481
-
Glu
TTC
[ENA]
¡û
>W1810671710
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
19267
19192
-
Glu
TTC
[ENA]
¡û
>W1810671711
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
18674
18599
-
Glu
TTC
[ENA]
¡û
>W1810671713
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
18299
18224
-
Glu
TTC
[ENA]
¡û
>W1810671715
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
18075
18000
-
Glu
TTC
[ENA]
¡û
>W1810671716
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
17635
17560
-
Glu
TTC
[ENA]
¡û
>W1810786561
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
123037
122962
-
Glu
TTC
[ENA]
¡û
>W1810786562
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122884
122809
-
Glu
TTC
[ENA]
¡û
>W1810786563
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122731
122656
-
Glu
TTC
[ENA]
¡û
>W1810786564
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122578
122503
-
Glu
TTC
[ENA]
¡û
>W1810786566
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122224
122149
-
Glu
TTC
[ENA]
¡û
>W1810786668
QRCS01000111
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
826
751
-
Glu
TTC
[ENA]
¡û
>W1810786670
QRCS01000111
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
457
382
-
Glu
TTC
[ENA]
¡û
>W1810786672
QRCS01000111
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
179
104
-
Glu
TTC
[ENA]
¡û
>W1510077707
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
844233
844158
-
Glu
TTC
[ENA]
¡û
>W1510077708
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
844096
844021
-
Glu
TTC
[ENA]
¡û
>W1510077709
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
843807
843732
-
Glu
TTC
[ENA]
¡û
>W1510077711
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
843583
843508
-
Glu
TTC
[ENA]
¡û
>W1511306476
JPMA01000002
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
206844
206919
+
Glu
TTC
[ENA]
¡û
>W1511306477
JPMA01000002
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
207133
207208
+
Glu
TTC
[ENA]
¡û
>W1511306479
JPMA01000002
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
207357
207432
+
Glu
TTC
[ENA]
¡û
>W1511477920
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
134611
134686
+
Glu
TTC
[ENA]
¡û
>W1511477921
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
134747
134822
+
Glu
TTC
[ENA]
¡û
>W1511477922
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
134883
134958
+
Glu
TTC
[ENA]
¡û
>W1511477923
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
135019
135094
+
Glu
TTC
[ENA]
¡û
>W1511477924
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
135306
135381
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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