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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299837 (28 seq.)
>W1711314117
MAUF01000007
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
81360
81436
+
Met
CAT
[ENA]
¡û
>W1711333447
MBPR02000009
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
72680
72756
+
Met
CAT
[ENA]
¡û
>W1712084385
NHRM01000013
Gammaproteobacteria
Acinetobacter wuhouensis WCHA62 [NHRM]
8947
9023
+
Met
CAT
[ENA]
¡û
>W131038011
AMFQ01000026
Gammaproteobacteria
Acinetobacter sp. WC-743 [AMFQ]
934
858
-
Met
CAT
[ENA]
¡û
>W131113621
APOS01000030
Gammaproteobacteria
Acinetobacter guillouiae CIP 63.46 [APOS]
270848
270924
+
Met
CAT
[ENA]
¡û
>W131114765
APPJ01000012
Gammaproteobacteria
Acinetobacter guillouiae NIPH 991 [APPJ]
21412
21336
-
Met
CAT
[ENA]
¡û
>W131114806
APPK01000039
Gammaproteobacteria
Acinetobacter bereziniae NIPH 3 [APPK]
104536
104460
-
Met
CAT
[ENA]
¡û
>W131116288
APQG01000015
Gammaproteobacteria
Acinetobacter bereziniae CIP 70.12 [APQG]
66010
65934
-
Met
CAT
[ENA]
¡û
>W131193942
ASQG01000032
Gammaproteobacteria
Acinetobacter guillouiae MSP4-18 [ASQG]
15882
15806
-
Met
CAT
[ENA]
¡û
>WENV180503388
OCAM01018173
[OCAM] human gut metagenome; faeces
310
234
-
Ile2
CAT
[ENA]
¢þ
>W141238574
BBLJ01000024
Gammaproteobacteria
Acinetobacter bereziniae [BBLJ]
18847
18923
+
Met
CAT
[ENA]
¡û
>WENV170022829
BCQK01057432
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
301
377
+
Met
CAT
[ENA]
¢þ
>C181030795
CP018259
Gammaproteobacteria
Acinetobacter bereziniae XH901 [CP018259]
1895593
1895669
+
Met
CAT
-
¡û
>C181178057
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
1569039
1568963
-
Met
CAT
-
¡û
>C191000168
AP014630
Gammaproteobacteria
Acinetobacter guillouiae NBRC 110550 [AP014630]
2017232
2017156
-
Met
CAT
-
¡û
>C191078945
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
2379582
2379658
+
Met
CAT
-
¡û
>C191101082
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
1557895
1557819
-
Met
CAT
-
¡û
>W141566715
JICM01000014
Gammaproteobacteria
Acinetobacter sp. ETR1 [JICM]
41059
41135
+
Met
CAT
[ENA]
¡û
>W1910637767
LQXQ01000002
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
113503
113427
-
Met
CAT
[ENA]
¡û
>W1911568885
PCQO01000001
Gammaproteobacteria
Acinetobacter sp. MYb10 [PCQO]
703959
704035
+
Met
CAT
[ENA]
¡û
>W1911749095
QWFV01000072
Gammaproteobacteria
Acinetobacter bereziniae 374/14 [QWFV]
31197
31273
+
Met
CAT
[ENA]
¡û
>W1810403245
PYIX02000027
Gammaproteobacteria
Acinetobacter sichuanensis WCHAc060041 [PYIX]
3572
3648
+
Met
CAT
[ENA]
¡û
>W1510016015
BBRY01000002
Gammaproteobacteria
Acinetobacter guillouiae KCTC 23200 [BBRY]
275110
275034
-
Met
CAT
[ENA]
¡û
>W1510069448
CDEL01000272
Gammaproteobacteria
Acinetobacter bereziniae CHI-40-1 [CDEL]
57081
57157
+
Met
CAT
[ENA]
¡û
>W1511452640
JVEK01000010
Gammaproteobacteria
Acinetobacter bereziniae 507_ABAU [JVEK]
3092
3168
+
Met
CAT
[ENA]
¡û
>W1511595596
LBNA01000033
Gammaproteobacteria
Acinetobacter sp. Ag2 [LBNA]
5988
6064
+
Met
CAT
[ENA]
¡û
>W121047441
AIEI01000072
Gammaproteobacteria
Acinetobacter bereziniae LMG 1003 [AIEI]
12408
12332
-
Met
CAT
[ENA]
¡û
>W1611065681
MBPR01003343
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
72680
72756
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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