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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30011 (20 seq.)
>W1710892711
LNEA01000221
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
5500
5589
+
Ser
GGA
[ENA]
¡û
>W1710893696
LNFA01000188
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
16775
16686
-
Ser
GGA
[ENA]
¡û
>W1711503701
MKTV01000060
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
95682
95771
+
Ser
GGA
[ENA]
¡û
>C171074550
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1691445
1691534
+
Ser
GGA
-
¡û
>C171074602
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1722982
1723071
+
Ser
GGA
-
¡û
>C171074654
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1694112
1694201
+
Ser
GGA
-
¡û
>C171074706
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1706341
1706430
+
Ser
GGA
-
¡û
>C171074810
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1691604
1691693
+
Ser
GGA
-
¡û
>C009832
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1691544
1691633
+
Ser
GGA
[Ensembl]
¡û
>WENV181167977
OEIU01118927
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
344
255
-
Ser
GGA
[ENA]
¢þ
>WENV183664404
ORJL010375227
[ORJL] groundwater metagenome; groundwater
1748
1837
+
Ser
GGA
[ENA]
¢þ
>WENV183674483
ORJL011394291
[ORJL] groundwater metagenome; groundwater
290
379
+
Ser
GGA
[ENA]
¢þ
>WENV183696412
ORMF012550449
[ORMF] groundwater metagenome; groundwater
488
399
-
Ser
GGA
[ENA]
¢þ
>WENV170711862
LNFM01007897
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3
92
+
Ser
GGA
[ENA]
¢þ
>WENV170713389
LNFM01029975
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
92
3
-
Ser
GGA
[ENA]
¢þ
>WENV170714163
LNFM01058505
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2452
2363
-
Ser
GGA
[ENA]
¢þ
>C151004022
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1741729
1741818
+
Ser
GGA
[Ensembl]
¡û
>C151004097
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
1713943
1713854
-
Ser
GGA
[Ensembl]
¡û
>W1610752977
LNEA01000221
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
5500
5589
+
Ser
GGA
[ENA]
¡û
>W1610753962
LNFA01000188
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
16775
16686
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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