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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300146 (75 seq.)
>W1710852749
LLWA01000072
Bacillota
Bacillus mycoides [LLWA]
16793
16718
-
His
GTG
[ENA]
¡û
>W1710922626
LOBD01000092
Bacillota
Bacillus cereus [LOBD]
219
144
-
His
GTG
[ENA]
¡û
>W1710937995
LOMP01000047
Bacillota
Bacillus cereus [LOMP]
221
146
-
His
GTG
[ENA]
¡û
>W1711047992
LRPH01000050
Bacillota
Bacillus mycoides [LRPH]
1229
1304
+
His
GTG
[ENA]
¡û
>W1711215059
LXLM01000011
Bacillota
Bacillus mycoides weihenstephanensis [LXLM]
1366
1441
+
His
GTG
[ENA]
¡û
>W1711215092
LXLM01000047
Bacillota
Bacillus mycoides weihenstephanensis [LXLM]
108554
108479
-
His
GTG
[ENA]
¡û
>W1711215152
LXLN01000011
Bacillota
Bacillus mycoides weihenstephanensis [LXLN]
91057
91132
+
His
GTG
[ENA]
¡û
>W1711215199
LXLN01000043
Bacillota
Bacillus mycoides weihenstephanensis [LXLN]
225
150
-
His
GTG
[ENA]
¡û
>W1711215258
LXLO01000010
Bacillota
Bacillus mycoides weihenstephanensis [LXLO]
1318
1393
+
His
GTG
[ENA]
¡û
>W1711215314
LXLO01000111
Bacillota
Bacillus mycoides weihenstephanensis [LXLO]
502
577
+
His
GTG
[ENA]
¡û
>W1711215356
LXLP01000012
Bacillota
Bacillus mycoides weihenstephanensis [LXLP]
1366
1441
+
His
GTG
[ENA]
¡û
>W1711215418
LXLP01000131
Bacillota
Bacillus mycoides weihenstephanensis [LXLP]
225
150
-
His
GTG
[ENA]
¡û
>W1711215454
LXLQ01000013
Bacillota
Bacillus mycoides weihenstephanensis [LXLQ]
1346
1421
+
His
GTG
[ENA]
¡û
>W1711215509
LXLQ01000095
Bacillota
Bacillus mycoides weihenstephanensis [LXLQ]
504
579
+
His
GTG
[ENA]
¡û
>W1711215552
LXLR01000012
Bacillota
Bacillus mycoides weihenstephanensis [LXLR]
1345
1420
+
His
GTG
[ENA]
¡û
>W1711215582
LXLR01000051
Bacillota
Bacillus mycoides weihenstephanensis [LXLR]
1050264
1050189
-
His
GTG
[ENA]
¡û
>W1711215655
LXLS01000010
Bacillota
Bacillus mycoides weihenstephanensis [LXLS]
1318
1393
+
His
GTG
[ENA]
¡û
>W1711215701
LXLS01000070
Bacillota
Bacillus mycoides weihenstephanensis [LXLS]
225
150
-
His
GTG
[ENA]
¡û
>W1711215756
LXLT01000010
Bacillota
Bacillus mycoides weihenstephanensis [LXLT]
1366
1441
+
His
GTG
[ENA]
¡û
>W1711215961
LXLV01000010
Bacillota
Bacillus mycoides weihenstephanensis [LXLV]
1366
1441
+
His
GTG
[ENA]
¡û
>W1711216063
LXLW01000011
Bacillota
Bacillus mycoides weihenstephanensis [LXLW]
808
883
+
His
GTG
[ENA]
¡û
>W1711216120
LXLW01000092
Bacillota
Bacillus mycoides weihenstephanensis [LXLW]
504
579
+
His
GTG
[ENA]
¡û
>W1711216269
LXLY01000015
Bacillota
Bacillus mycoides weihenstephanensis [LXLY]
808
883
+
His
GTG
[ENA]
¡û
>W1711216315
LXLY01000075
Bacillota
Bacillus mycoides weihenstephanensis [LXLY]
225
150
-
His
GTG
[ENA]
¡û
>W131004721
AHDZ01000068
Bacillota
Bacillus cereus HuA3-9 [AHDZ]
529
604
+
His
GTG
[ENA]
¡û
>W131005462
AHEZ01000015
Bacillota
Bacillus cereus VD118 [AHEZ]
1439
1514
+
His
GTG
[ENA]
¡û
>W131005904
AHFE01000012
Bacillota
Bacillus cereus VD146 [AHFE]
460
535
+
His
GTG
[ENA]
¡û
>W131006218
AHFO01000012
Bacillota
Bacillus mycoides VDM019 [AHFO]
3680
3755
+
His
GTG
[ENA]
¡û
>W1711681050
MRWW01000008
Bacillota
Bacillus mycoides [MRWW]
205676
205601
-
His
GTG
[ENA]
¡û
>W1711737723
MUAS01000012
Bacillota
Bacillus mycoides weihenstephanensis [MUAS]
1368
1443
+
His
GTG
[ENA]
¡û
>W1712028307
NFDG01000119
Bacillota
Bacillus thuringiensis serovar navarrensis [NFDG]
53382
53307
-
His
GTG
[ENA]
¡û
>W1712106105
NIUP01000003
Bacillota
Bacillus mycoides [NIUP]
42132
42057
-
His
GTG
[ENA]
¡û
>W1712107293
NIZC01000010
Bacillota
Bacillus mycoides [NIZC]
1161
1236
+
His
GTG
[ENA]
¡û
>C171111993
CP020743
Bacillota
Bacillus mycoides Gnyt1 [CP020743]
568168
568243
+
His
GTG
-
¡û
>C171112026
CP020743
Bacillota
Bacillus mycoides Gnyt1 [CP020743]
5016570
5016495
-
His
GTG
-
¡û
>W141232329
BAUY01000063
Bacillota
Bacillus mycoides NBRC 101238 = DSM 11821 [BAUY]
16836
16761
-
His
GTG
[ENA]
¡û
>C08002244
CP000903
Bacillota
Bacillus mycoides KBAB4 [CP000903]
521819
521894
+
His
GTG
[Ensembl]
¡û
>WENV170643898
JMBV01006224
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
823
898
+
His
GTG
[ENA]
¢þ
>C191156584
CP037992
Bacillota
Bacillus mycoides TH26 [CP037992]
3130123
3130048
-
His
GTG
-
¡û
>W09128777
ACLX01000017
Bacillota
Bacillus mycoides AH621 [ACLX]
1209
1284
+
His
GTG
[ENA]
¡û
>W141734749
JNLY01000007
Bacillota
Bacillus mycoides weihenstephanensis [JNLY]
367
442
+
His
GTG
[ENA]
¡û
>W1910211046
FMAK01000054
Bacillota
Bacillus mycoides SDA_GO95 [FMAK]
261651
261576
-
His
GTG
[ENA]
¡û
>W1910212651
FMJF01000011
Bacillota
Bacillus mycoides ADRIA I21 [FMJF]
188
263
+
His
GTG
[ENA]
¡û
>W1910841351
NADT01000069
Bacillota
Bacillus sp. SRB_8 [NADT]
704
779
+
His
GTG
[ENA]
¡û
>W1910841436
NADU01000033
Bacillota
Bacillus sp. SRB_28 [NADU]
106308
106233
-
His
GTG
[ENA]
¡û
>W1910841515
NADV01000027
Bacillota
Bacillus sp. SRB_331 [NADV]
41500
41425
-
His
GTG
[ENA]
¡û
>W1911313748
NUCL01000010
Bacillota
Bacillus mycoides AFS017891 [NUCL]
16742
16667
-
His
GTG
[ENA]
¡û
>W1911322960
NUHO01000031
Bacillota
Bacillus cereus AFS053130 [NUHO]
21150
21075
-
His
GTG
[ENA]
¡û
>W1911326611
NUJP01000358
Bacillota
Bacillus cereus AFS046340 [NUJP]
29
104
+
His
GTG
[ENA]
¡û
>W1911329609
NULF01000393
Bacillota
Bacillus cereus AFS042006 [NULF]
208
133
-
His
GTG
[ENA]
¡û
>W1911366333
NVFI01000006
Bacillota
Bacillus mycoides AFS084669 [NVFI]
212477
212402
-
His
GTG
[ENA]
¡û
>W1911368909
NVGU01000010
Bacillota
Bacillus mycoides AFS075998 [NVGU]
103470
103395
-
His
GTG
[ENA]
¡û
>W1911565776
PCOH01000058
Bacillota
Bacillus sp. MYb56 [PCOH]
11528
11453
-
His
GTG
[ENA]
¡û
>W1810720846
QNRN01000014
Bacillota
Bacillus sp. DB-2 [QNRN]
460
535
+
His
GTG
[ENA]
¡û
>C151057326
CP009692
Bacillota
Bacillus mycoides ATCC 6462 [CP009692]
5242368
5242293
-
His
GTG
[Ensembl]
¡û
>W1511524957
JYFS01000078
Bacillota
Bacillus mycoides B38V [JYFS]
967
1042
+
His
GTG
[ENA]
¡û
>W1511524990
JYFS01000098
Bacillota
Bacillus mycoides B38V [JYFS]
1446
1521
+
His
GTG
[ENA]
¡û
>W1511562953
LABT01000010
Bacillota
Bacillus mycoides WSBC 10969 [LABT]
4231
4306
+
His
GTG
[ENA]
¡û
>W121025776
AHCL01000090
Bacillota
Bacillus cereus VD142 [AHCL]
17151
17076
-
His
GTG
[ENA]
¡û
>W121026938
AHDJ01000009
Bacillota
Bacillus cereus BAG5X1-1 [AHDJ]
618
693
+
His
GTG
[ENA]
¡û
>W121026986
AHDJ01000040
Bacillota
Bacillus cereus BAG5X1-1 [AHDJ]
15845
15770
-
His
GTG
[ENA]
¡û
>W121027198
AHDN01000024
Bacillota
Bacillus cereus BAG6O-2 [AHDN]
1304
1229
-
His
GTG
[ENA]
¡û
>W121027230
AHDN01000058
Bacillota
Bacillus cereus BAG6O-2 [AHDN]
461
536
+
His
GTG
[ENA]
¡û
>W121027640
AHDS01000012
Bacillota
Bacillus mycoides CER057 [AHDS]
1036
1111
+
His
GTG
[ENA]
¡û
>W121027882
AHDV01000001
Bacillota
Bacillus cereus HuA2-1 [AHDV]
1132
1207
+
His
GTG
[ENA]
¡û
>W121027990
AHDX01000012
Bacillota
Bacillus cereus HuA2-4 [AHDX]
529
604
+
His
GTG
[ENA]
¡û
>W121028125
AHEA01000055
Bacillota
Bacillus cereus HuA4-10 [AHEA]
217612
217537
-
His
GTG
[ENA]
¡û
>W121030085
AHFQ01000002
Bacillota
Bacillus cereus VDM034 [AHFQ]
535
610
+
His
GTG
[ENA]
¡û
>W1610514253
FLZU01000013
Bacillota
Bacillus mycoides INRA 5 [FLZU]
1407
1482
+
His
GTG
[ENA]
¡û
>W1610515783
FMBF01000013
Bacillota
Bacillus mycoides SDA_NFFE664 [FMBF]
1398
1473
+
His
GTG
[ENA]
¡û
>W1610715888
LLWA01000072
Bacillota
Bacillus mycoides [LLWA]
16793
16718
-
His
GTG
[ENA]
¡û
>W1610780105
LOBD01000092
Bacillota
Bacillus cereus [LOBD]
219
144
-
His
GTG
[ENA]
¡û
>W1610794119
LOMP01000047
Bacillota
Bacillus cereus [LOMP]
221
146
-
His
GTG
[ENA]
¡û
>W1610889121
LRPH01000050
Bacillota
Bacillus mycoides [LRPH]
1229
1304
+
His
GTG
[ENA]
¡û
>W1710595559
FTLZ01000017
Bacillota
Bacillus cereus [FTLZ]
926
851
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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