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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300472 (79 seq.)
>W1710871109
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
36515
36590
+
Phe
GAA
[ENA]
¡û
>W1710912943
LNSA01000035
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
38178
38103
-
Phe
GAA
[ENA]
¡û
>W1710912985
LNSB01000041
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
28598
28673
+
Phe
GAA
[ENA]
¡û
>W1710913006
LNSC01000011
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
86468
86393
-
Phe
GAA
[ENA]
¡û
>W1711009260
LQQO01000061
Alphaproteobacteria
Sphingomonas hankookensis [LQQO]
93997
94072
+
Phe
GAA
[ENA]
¡û
>W1711072470
LSHQ01000002
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
742
817
+
Phe
GAA
[ENA]
¡û
>W1711072768
LSHX01000025
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
729
804
+
Phe
GAA
[ENA]
¡û
>W1711073049
LSIE01000091
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
4336
4261
-
Phe
GAA
[ENA]
¡û
>W1711073281
LSIJ01000105
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
6270
6345
+
Phe
GAA
[ENA]
¡û
>W1711073999
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5650
5725
+
Phe
GAA
[ENA]
¡û
>W1711074000
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1711075125
LSKD01000034
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1711075293
LSKH01000073
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
7876
7801
-
Phe
GAA
[ENA]
¡û
>W1711075362
LSKI01000158
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
3952
3877
-
Phe
GAA
[ENA]
¡û
>W1711075599
LSKO01001061
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
3961
3886
-
Phe
GAA
[ENA]
¡û
>W1711075672
LSKP01000094
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
735
810
+
Phe
GAA
[ENA]
¡û
>W1711259790
LYVN01000091
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
754
679
-
Phe
GAA
[ENA]
¡û
>W1711386370
MEFG01000020
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
63623
63698
+
Phe
GAA
[ENA]
¡û
>W1711502549
MKSU01000017
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
84022
84097
+
Phe
GAA
[ENA]
¡û
>W1711942678
NBBI01000003
Alphaproteobacteria
Sphingomonas dokdonensis [NBBI]
193219
193294
+
Phe
GAA
[ENA]
¡û
>W131098625
AORY01000004
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
4436
4361
-
Phe
GAA
[ENA]
¡û
>C171094542
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
75156
75231
+
Phe
GAA
-
¡û
>C171128405
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
953576
953651
+
Phe
GAA
-
¡û
>C019747
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
2016753
2016678
-
Phe
GAA
[Ensembl]
¡û
>WENV180016489
FSVG01000602
[FSVG] metagenome; soil
10407
10482
+
Phe
GAA
[ENA]
¢þ
>WENV181226876
OFDN01000253
[OFDN] hot springs metagenome; Water
11554
11629
+
Phe
GAA
[ENA]
¢þ
>WENV183528747
ONZX01005230
[ONZX] human gut metagenome; human gut
3814
3739
-
Phe
GAA
[ENA]
¢þ
>WENV183636354
OOKD01000072
[OOKD] human gut metagenome; Skin biopsy
45757
45682
-
Phe
GAA
[ENA]
¢þ
>WENV183731436
PJTT01000002
[PJTT] soil metagenome; Soil (2) enriched on wood chips
680259
680334
+
Phe
GAA
[ENA]
¢þ
>WENV170014208
AXCI01000935
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
392
316
-
Phe
GAA
[ENA]
¢þ
>WENV170018568
BBPD01000013
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
82299
82374
+
Phe
GAA
[ENA]
¢þ
>WENV170019681
BBPE01000046
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
488
413
-
Phe
GAA
[ENA]
¢þ
>WENV170574473
FLYM01043198
[FLYM] hot springs metagenome; Sediment
6774
6699
-
Phe
GAA
[ENA]
¢þ
>WENV170645820
JPYU01094936
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
223
148
-
Phe
GAA
[ENA]
¢þ
>W141452337
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
601831
601756
-
Phe
GAA
[ENA]
¡û
>WENV171003189
NNBT01002249
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
23351
23426
+
Phe
GAA
[ENA]
¢þ
>C191000556
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
653981
654056
+
Phe
GAA
-
¡û
>C191163790
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1695441
1695516
+
Phe
GAA
-
¡û
>W09102938
AAIP01000001
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
225480
225405
-
Phe
GAA
[ENA]
¡û
>W1910744373
MIAM01000005
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
24414
24489
+
Phe
GAA
[ENA]
¡û
>W1911494753
OBMI01000001
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
1264540
1264465
-
Phe
GAA
[ENA]
¡û
>W1911719025
QQWV01000018
Alphaproteobacteria
Sphingomonas sp. ABOLH ABOLH S-NIH.Pt17_1112 [QQWV]
2156
2231
+
Phe
GAA
[ENA]
¡û
>W1911719075
QQWW01000006
Alphaproteobacteria
Sphingomonas sp. ABOLG ABOLG S-NIH.Pt13_0512 [QQWW]
28632
28707
+
Phe
GAA
[ENA]
¡û
>W1911752762
QWLV01000002
Alphaproteobacteria
Sphingomonas gilva ZDH117 [QWLV]
732347
732422
+
Phe
GAA
[ENA]
¡û
>W1911765805
QXDC01000005
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
276508
276583
+
Phe
GAA
[ENA]
¡û
>W1911783357
QXTF01000001
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
1025512
1025587
+
Phe
GAA
[ENA]
¡û
>W1810120407
PHSO01000009
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
26171
26096
-
Phe
GAA
[ENA]
¡û
>W1810390351
PXYJ01000003
Alphaproteobacteria
Allosphingosinicella vermicomposti KCTC 22446 [PXYJ]
129376
129301
-
Phe
GAA
[ENA]
¡û
>W1810917821
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
1795055
1795130
+
Phe
GAA
[ENA]
¡û
>W1511221172
JNFC01000038
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
18222
18297
+
Phe
GAA
[ENA]
¡û
>W1511324672
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
907480
907405
-
Phe
GAA
[ENA]
¡û
>W1511344089
JRFJ01000006
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
130180
130255
+
Phe
GAA
[ENA]
¡û
>W1511581106
LARW01000059
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
532
457
-
Phe
GAA
[ENA]
¡û
>W1511587087
LAZX01000092
Alphaproteobacteria
Sphingomonas sp. Ag1 [LAZX]
127883
127808
-
Phe
GAA
[ENA]
¡û
>W1610056922
BBWQ01000020
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
110293
110368
+
Phe
GAA
[ENA]
¡û
>W1610056955
BBWR01000011
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
15451
15376
-
Phe
GAA
[ENA]
¡û
>W1610733455
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
36515
36590
+
Phe
GAA
[ENA]
¡û
>W1610771302
LNSA01000035
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
38178
38103
-
Phe
GAA
[ENA]
¡û
>W1610771344
LNSB01000041
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
28598
28673
+
Phe
GAA
[ENA]
¡û
>W1610771365
LNSC01000011
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
86468
86393
-
Phe
GAA
[ENA]
¡û
>W1610857780
LQQO01000061
Alphaproteobacteria
Sphingomonas hankookensis [LQQO]
93997
94072
+
Phe
GAA
[ENA]
¡û
>W1610911730
LSHQ01000002
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
742
817
+
Phe
GAA
[ENA]
¡û
>W1610912028
LSHX01000025
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
729
804
+
Phe
GAA
[ENA]
¡û
>W1610912354
LSIE01000091
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
4336
4261
-
Phe
GAA
[ENA]
¡û
>W1610912586
LSIJ01000105
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
6270
6345
+
Phe
GAA
[ENA]
¡û
>W1610913304
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5650
5725
+
Phe
GAA
[ENA]
¡û
>W1610913305
LSJC01000214
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1610914430
LSKD01000034
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
4341
4266
-
Phe
GAA
[ENA]
¡û
>W1610914598
LSKH01000073
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
7876
7801
-
Phe
GAA
[ENA]
¡û
>W1610914667
LSKI01000158
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
3952
3877
-
Phe
GAA
[ENA]
¡û
>W1610914904
LSKO01001061
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
3961
3886
-
Phe
GAA
[ENA]
¡û
>W1610914977
LSKP01000094
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
735
810
+
Phe
GAA
[ENA]
¡û
>W1710053621
BBWQ01000020
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
110293
110368
+
Phe
GAA
[ENA]
¡û
>W1710053654
BBWR01000011
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
15451
15376
-
Phe
GAA
[ENA]
¡û
>W1710083096
BDJB01000007
Alphaproteobacteria
Sphingomonas sp. TZW2008 [BDJB]
103316
103241
-
Phe
GAA
[ENA]
¡û
>W1710542338
FNZB01000002
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
241637
241712
+
Phe
GAA
[ENA]
¡û
>W1710543458
FNZZ01000002
Alphaproteobacteria
Sphingomonas palmae JS21-1 [FNZZ]
591567
591642
+
Phe
GAA
[ENA]
¡û
>W1710573604
FOXP01000005
Alphaproteobacteria
Sphingomonas rubra [FOXP]
207008
207083
+
Phe
GAA
[ENA]
¡û
>W1710588146
FQZC01000004
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
110632
110707
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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