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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30052 (40 seq.)
>W131053705
ANAH01000049
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
153362
153273
-
Ser
GCT
[ENA]
¡û
>W131086638
AOBT01000021
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
105193
105282
+
Ser
GCT
[ENA]
¡û
>W1711625298
MPIN01000031
Myxococcota
Cystobacter ferrugineus [MPIN]
27208
27119
-
Ser
GCT
[ENA]
¡û
>W1711628684
MPOI01000028
Myxococcota
Archangium sp. Cb G35 [MPOI]
21380
21469
+
Ser
GCT
[ENA]
¡û
>C014524
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
2271150
2271061
-
Ser
GCT
[Ensembl]
¡û
>w012173
AAMD01000157
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
14801
14892
+
Ser
GCT
[ENA]
¡û
>WENV180016102
FSUC01000282
[FSUC] metagenome; soil
4960
5049
+
Ser
GCT
[ENA]
¢þ
>WENV181165339
OEIR01749310
[OEIR] soil metagenome; soil
29
118
+
Ser
GCT
[ENA]
¢þ
>WENV181184972
OEKZ01000440
[OEKZ] metagenome; 1998
3143
3054
-
Ser
GCT
[ENA]
¢þ
>WENV170556905
CXWL01015948
[CXWL] groundwater metagenome; biofilm material
3898
3987
+
Ser
GCT
[ENA]
¢þ
>C181057893
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
2970883
2970794
-
Ser
GCT
-
¡û
>C181059844
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
6262047
6261958
-
Ser
GCT
-
¡û
>C181060665
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
2346874
2346785
-
Ser
GCT
-
¡û
>C191013161
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
2291797
2291708
-
Ser
GCT
-
¡û
>C191013226
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
2203928
2203839
-
Ser
GCT
-
¡û
>C191013293
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
2074784
2074695
-
Ser
GCT
-
¡û
>C191013357
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
2211580
2211491
-
Ser
GCT
-
¡û
>C191013422
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
2221934
2221845
-
Ser
GCT
-
¡û
>C191013487
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
2221934
2221845
-
Ser
GCT
-
¡û
>C191128700
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2215934
2215845
-
Ser
GCT
-
¡û
>W141695207
JMCB01000015
Myxococcota
Hyalangium minutum [JMCB]
6485
6396
-
Ser
GCT
[ENA]
¡û
>W141695267
JMCC01000071
Myxococcota
Enhygromyxa salina [JMCC]
62133
62222
+
Ser
GCT
[ENA]
¡û
>W141806653
JPMI01000150
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
18178
18267
+
Ser
GCT
[ENA]
¡û
>W1911701612
QNUN01000016
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
215715
215804
+
Ser
GCT
[ENA]
¡û
>W1810452206
PZOX01000014
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
15807
15896
+
Ser
GCT
[ENA]
¡û
>W1810884685
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
363026
362937
-
Ser
GCT
[ENA]
¡û
>C151008208
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
2950139
2950050
-
Ser
GCT
[Ensembl]
¡û
>C151083600
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
3921069
3920980
-
Ser
GCT
[Ensembl]
¡û
>C151091012
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
6283876
6283965
+
Ser
GCT
[Ensembl]
¡û
>C11114354
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4149882
4149793
-
Ser
GCT
[Ensembl]
¡û
>C11119146
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
3286542
3286453
-
Ser
GCT
[Ensembl]
¡û
>C121012100
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2352760
2352671
-
Ser
GCT
[Ensembl]
¡û
>W121102870
AKXT01000022
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
43506
43417
-
Ser
GCT
[ENA]
¡û
>W121103092
AKYI01000049
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
5989
6078
+
Ser
GCT
[ENA]
¡û
>C131011697
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
2822517
2822428
-
Ser
GCT
[Ensembl]
¡û
>W1710513722
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
107546
107457
-
Ser
GCT
[ENA]
¡û
>W1710529819
FNOH01000016
Myxococcota
Myxococcus xanthus [FNOH]
162776
162865
+
Ser
GCT
[ENA]
¡û
>W1710544104
FOAP01000001
Myxococcota
Stigmatella aurantiaca [FOAP]
581654
581565
-
Ser
GCT
[ENA]
¡û
>W1710554011
FOIB01000011
Myxococcota
Myxococcus fulvus [FOIB]
55559
55470
-
Ser
GCT
[ENA]
¡û
>W1710554370
FOIJ01000027
Myxococcota
Stigmatella erecta [FOIJ]
36853
36764
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK