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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30071 (45 seq.)
>W131222235
AUBC01000007
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
114670
114759
+
Ser
CGA
[ENA]
¡û
>w015398
AAPC01000002
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
32729
32638
-
Ser
CGA
[ENA]
¡û
>WENV180254081
OBEQ010601636
[OBEQ] groundwater metagenome; groundwater
607
696
+
Ser
CGA
[ENA]
¢þ
>WENV180295819
OBIZ01349908
[OBIZ] soil metagenome; soil
105
194
+
Ser
CGA
[ENA]
¢þ
>WENV180353523
OBLQ010839500
[OBLQ] soil metagenome; soil
4
93
+
Ser
CGA
[ENA]
¢þ
>WENV181155469
OEID01185329
[OEID] soil metagenome; soil
60
149
+
Ser
CGA
[ENA]
¢þ
>WENV181162235
OEIN01011436
[OEIN] soil metagenome; soil
173
84
-
Ser
CGA
[ENA]
¢þ
>WENV181164967
OEIR01492087
[OEIR] soil metagenome; soil
50
139
+
Ser
CGA
[ENA]
¢þ
>WENV181234116
OFET01004660
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1278
1367
+
Ser
CGA
[ENA]
¢þ
>WENV181308066
OFIS01000173
[OFIS] sludge metagenome; sludge
42391
42480
+
Ser
CGA
[ENA]
¢þ
>WENV181311418
OFJB01001912
[OFJB] sludge metagenome; sludge
1431
1342
-
Ser
CGA
[ENA]
¢þ
>WENV181416878
OGCL01172297
[OGCL] hot springs metagenome; Hot spring water
439
528
+
Ser
CGA
[ENA]
¢þ
>W141180655
AYGY02000010
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
31183
31094
-
Ser
CGA
[ENA]
¡û
>W141220772
AZYE01001026
Alphaproteobacteria
Microvirga lupini [AZYE]
10084
9995
-
Ser
CGA
[ENA]
¡û
>C08011428
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
219524
219613
+
Ser
CGA
[Ensembl]
¡û
>W141276708
JAEA01000001
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
551734
551645
-
Ser
CGA
[ENA]
¡û
>WENV183669009
ORJL010797358
[ORJL] groundwater metagenome; groundwater
166
255
+
Ser
CGA
[ENA]
¢þ
>WENV183677117
ORJL011712773
[ORJL] groundwater metagenome; groundwater
1428
1339
-
Ser
CGA
[ENA]
¢þ
>WENV183682729
ORMF010483891
[ORMF] groundwater metagenome; groundwater
1261
1172
-
Ser
CGA
[ENA]
¢þ
>WENV183688089
ORMF011233063
[ORMF] groundwater metagenome; groundwater
464
553
+
Ser
CGA
[ENA]
¢þ
>WENV170612792
FUWD012690079
[FUWD] metagenome; unknown
78
167
+
Ser
CGA
[ENA]
¢þ
>WENV170895202
MDTD01076236
[MDTD] marine metagenome; seawater
4781
4692
-
Ser
CGA
[ENA]
¢þ
>C181020285
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
2093703
2093792
+
Ser
CGA
-
¡û
>C181089616
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
623132
623221
+
Ser
CGA
-
¡û
>C181179109
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3884494
3884583
+
Ser
CGA
-
¡û
>W1911148530
NPEX01000502
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
2101
2012
-
Ser
CGA
[ENA]
¡û
>W1911411012
NWUC01000006
Alphaproteobacteria
Pararhizobium haloflavum XC0140 [NWUC]
177
88
-
Ser
CGA
[ENA]
¡û
>W1810365561
PVUG01000002
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
259530
259619
+
Ser
CGA
[ENA]
¡û
>W1810534741
QDAH01000042
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
41132
41221
+
Ser
CGA
[ENA]
¡û
>W1810763437
QQBB01000013
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
73623
73534
-
Ser
CGA
[ENA]
¡û
>SRA1015822
SRR023846.212004
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
253
164
-
Ser
CGA
[SRA]
>SRA1016286
SRR023846.436351
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
253
164
-
Ser
CGA
[SRA]
>SRA1049406
SRR035095.72269
454 Sequencing (SRP001816)
88
177
+
Ser
CGA
[SRA]
>C161016811
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
632549
632638
+
Ser
CGA
[Ensembl]
¡û
>W1610056460
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
124300
124389
+
Ser
CGA
[ENA]
¡û
>W1610056603
BBWK01000006
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
87178
87089
-
Ser
CGA
[ENA]
¡û
>W1610057026
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
131980
132069
+
Ser
CGA
[ENA]
¡û
>W121068032
AJUA01000072
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
340472
340561
+
Ser
CGA
[ENA]
¡û
>W1610516177
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
746121
746210
+
Ser
CGA
[ENA]
¡û
>W1710015507
AQQS01000048
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
21896
21985
+
Ser
CGA
[ENA]
¡û
>W1710053159
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
124300
124389
+
Ser
CGA
[ENA]
¡û
>W1710053302
BBWK01000006
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
87178
87089
-
Ser
CGA
[ENA]
¡û
>W1710053725
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
131980
132069
+
Ser
CGA
[ENA]
¡û
>W1710501468
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
746121
746210
+
Ser
CGA
[ENA]
¡û
>W1710535134
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
4892054
4892143
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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