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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300945 (45 seq.)
>W1710932215
LOIC01000022
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
27768
27693
-
Thr
TGT
[ENA]
¡û
>W1711089345
LSZO01000017
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
3082
3007
-
Thr
TGT
[ENA]
¡û
>W1711178382
LWGQ01000126
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
26991
26916
-
Thr
TGT
[ENA]
¡û
>W131182916
ARRE01000004
Gammaproteobacteria
gamma proteobacterium SCGC AAA536-N21 [ARRE]
18908
18983
+
Thr
TGT
[ENA]
¡û
>C016687
BX470251
Gammaproteobacteria
Photorhabdus laumondii [BX470251]
5502084
5502009
-
Thr
TGT
[Ensembl]
¡û
>WENV180358121
OBNP01001120
[OBNP] marine metagenome; seawater
1250
1175
-
Thr
TGT
[ENA]
¢þ
>W141258483
CBXF010000153
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [CBXF]
3572
3647
+
Thr
TGT
[ENA]
¡û
>WENV170514572
CEWA01095965
[CEWA] marine metagenome genome assembly TARA_038_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1184
1259
+
Thr
TGT
[ENA]
¢þ
>C181017170
CP015281
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DSPV002N [CP015281]
5502081
5502006
-
Thr
TGT
-
¡û
>C181108053
CP024900
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DJC [CP024900]
5316597
5316522
-
Thr
TGT
-
¡û
>C181108130
CP024901
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii TT01 [CP024901]
5500782
5500707
-
Thr
TGT
-
¡û
>W1910339719
FTLG01000027
Gammaproteobacteria
Xenorhabdus innexi [FTLG]
3816
3891
+
Thr
TGT
[ENA]
¡û
>W1910932831
NIUA01000001
Gammaproteobacteria
Xenorhabdus szentirmaii US123 [NIUA]
3079810
3079735
-
Thr
TGT
[ENA]
¡û
>W1910939963
NJAJ01000077
Gammaproteobacteria
Xenorhabdus stockiae DSM 17904 [NJAJ]
3897
3972
+
Thr
TGT
[ENA]
¡û
>W1910942264
NJGH01000113
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
4132
4207
+
Thr
TGT
[ENA]
¡û
>W1911237770
NSCD01000110
Gammaproteobacteria
Photorhabdus sp. S7-51 [NSCD]
897
822
-
Thr
TGT
[ENA]
¡û
>W1911237844
NSCE01000109
Gammaproteobacteria
Photorhabdus sp. S14-60 [NSCE]
897
822
-
Thr
TGT
[ENA]
¡û
>W1911237987
NSCG01000095
Gammaproteobacteria
Photorhabdus sp. S5P8-50 [NSCG]
897
822
-
Thr
TGT
[ENA]
¡û
>W1911238129
NSCI01000073
Gammaproteobacteria
Photorhabdus laumondii subsp. clarkei BOJ-47 [NSCI]
768
693
-
Thr
TGT
[ENA]
¡û
>W1911238195
NSCJ01000093
Gammaproteobacteria
Photorhabdus sp. S10-54 [NSCJ]
3921
3996
+
Thr
TGT
[ENA]
¡û
>W1911238404
NSCM01000087
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
3921
3996
+
Thr
TGT
[ENA]
¡û
>W1911238475
NSCN01000051
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
18570
18495
-
Thr
TGT
[ENA]
¡û
>W1911632389
PUJX01000071
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
688
613
-
Thr
TGT
[ENA]
¡û
>W1810339665
PUWX01000073
Gammaproteobacteria
Photorhabdus luminescens H7 [PUWX]
1368
1293
-
Thr
TGT
[ENA]
¡û
>SRA1016666
SRR027673.19915
The LACAr cooperative project: microbial diversity in coastal systems along a latitudinal gradient from South Atlantic to the Caribbean (SRP001244)
19
94
+
Thr
TGT
[SRA]
>SRA1016667
SRR027673.20357
The LACAr cooperative project: microbial diversity in coastal systems along a latitudinal gradient from South Atlantic to the Caribbean (SRP001244)
19
94
+
Thr
TGT
[SRA]
>SRA1016669
SRR027673.23655
The LACAr cooperative project: microbial diversity in coastal systems along a latitudinal gradient from South Atlantic to the Caribbean (SRP001244)
19
94
+
Thr
TGT
[SRA]
>SRA1016670
SRR027673.24913
The LACAr cooperative project: microbial diversity in coastal systems along a latitudinal gradient from South Atlantic to the Caribbean (SRP001244)
19
94
+
Thr
TGT
[SRA]
>C151098177
FO704550
Gammaproteobacteria
Xenorhabdus doucetiae FRM16 [FO704550]
268176
268251
+
Thr
TGT
[Ensembl]
¡û
>C151098278
FO704551
Gammaproteobacteria
Xenorhabdus poinarii G6 [FO704551]
3494227
3494152
-
Thr
TGT
[Ensembl]
¡û
>WENV034476
AACY021613011
Marine microbial communities from Global Ocean Sampling (GOS)
245
170
-
Thr
TGT
[ENA]
>WENV038102
AACY021907293
Marine microbial communities from Global Ocean Sampling (GOS)
941
866
-
Thr
TGT
[ENA]
>W1511401197
JTHJ02000199
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
3565
3640
+
Thr
TGT
[ENA]
¡û
>W1511401239
JTHK01000111
Gammaproteobacteria
Xenorhabdus sp. NBAII XenSa04 [JTHK]
111
36
-
Thr
TGT
[ENA]
¡û
>W1511512710
JXUR02000284
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
113
38
-
Thr
TGT
[ENA]
¡û
>C161042038
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2701579
2701654
+
Thr
TGT
[Ensembl]
¡û
>C161042042
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2807964
2807889
-
Thr
TGT
[Ensembl]
¡û
>WENV062265
AACY023455212
Marine microbial communities from Global Ocean Sampling (GOS)
1052
977
-
Thr
TGT
[ENA]
>WENV007082
AACY020184531
Marine microbial communities from Global Ocean Sampling (GOS)
617
542
-
Thr
TGT
[ENA]
>WENV007092
AACY020184660
Marine microbial communities from Global Ocean Sampling (GOS)
533
608
+
Thr
TGT
[ENA]
>WENV075268
AACY024023377
Marine microbial communities from Global Ocean Sampling (GOS)
746
821
+
Thr
TGT
[ENA]
>W1610789746
LOIC01000022
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
27768
27693
-
Thr
TGT
[ENA]
¡û
>W1610923723
LSZO01000017
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
3082
3007
-
Thr
TGT
[ENA]
¡û
>W1610986429
LWGQ01000126
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
26991
26916
-
Thr
TGT
[ENA]
¡û
>W1710508756
FMWJ01000054
Gammaproteobacteria
Photorhabdus luminescens [FMWJ]
3630
3705
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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