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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30096 (52 seq.)
>W1711710980
MTAA01000035
Betaproteobacteria
Neisseria dumasiana 114725 [MTAA]
512
423
-
Leu
TAA
[ENA]
¡û
>W1711711019
MTAB01000026
Betaproteobacteria
Neisseria dumasiana 124861 [MTAB]
14344
14255
-
Leu
TAA
[ENA]
¡û
>W1711711076
MTAC01000045
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
4324
4235
-
Leu
TAA
[ENA]
¡û
>W1711712076
MTBM01000013
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
44338
44249
-
Leu
TAA
[ENA]
¡û
>W1711712128
MTBN01000011
Betaproteobacteria
Neisseria animaloris [MTBN]
59367
59456
+
Leu
TAA
[ENA]
¡û
>W1711712181
MTBO01000063
Betaproteobacteria
Neisseria dentiae [MTBO]
2198
2109
-
Leu
TAA
[ENA]
¡û
>W131180965
ARNN01000036
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
22535
22446
-
Leu
TAA
[ENA]
¡û
>WENV180624057
OCQG01073444
[OCQG] human oral metagenome; human oral
116
205
+
Leu
TAA
[ENA]
¢þ
>WENV180727923
ODGU01016238
[ODGU] human metagenome; G_DNA_Supragingival plaque
142
231
+
Leu
TAA
[ENA]
¢þ
>WENV180735874
ODHB01001393
[ODHB] human metagenome; G_DNA_Supragingival plaque
7342
7253
-
Leu
TAA
[ENA]
¢þ
>WENV180759254
ODHY01003590
[ODHY] human metagenome; G_DNA_Buccal mucosa
3091
3002
-
Leu
TAA
[ENA]
¢þ
>WENV180822962
ODJW01001256
[ODJW] human metagenome; G_DNA_Supragingival plaque
2967
3056
+
Leu
TAA
[ENA]
¢þ
>WENV180834342
ODKD01014262
[ODKD] human metagenome; G_DNA_Supragingival plaque
1019
930
-
Leu
TAA
[ENA]
¢þ
>WENV180846586
ODKT01015366
[ODKT] human metagenome; G_DNA_Supragingival plaque
2526
2437
-
Leu
TAA
[ENA]
¢þ
>WENV180927452
ODTM01000644
[ODTM] human metagenome; G_DNA_Supragingival plaque
17321
17232
-
Leu
TAA
[ENA]
¢þ
>WENV180938453
ODTX01002119
[ODTX] human metagenome; G_DNA_Supragingival plaque
293
382
+
Leu
TAA
[ENA]
¢þ
>WENV180945255
ODUC01096642
[ODUC] human metagenome; G_DNA_Supragingival plaque
93
182
+
Leu
TAA
[ENA]
¢þ
>WENV180973292
ODUW01002980
[ODUW] human metagenome; G_DNA_Supragingival plaque
184
273
+
Leu
TAA
[ENA]
¢þ
>WENV180983293
ODVF01007097
[ODVF] human metagenome; G_DNA_Supragingival plaque
294
383
+
Leu
TAA
[ENA]
¢þ
>WENV180987527
ODVK01036406
[ODVK] human metagenome; G_DNA_Supragingival plaque
541
452
-
Leu
TAA
[ENA]
¢þ
>WENV180992420
ODVP01004583
[ODVP] human metagenome; G_DNA_Buccal mucosa
943
1032
+
Leu
TAA
[ENA]
¢þ
>WENV181008205
ODWE01002798
[ODWE] human metagenome; G_DNA_Supragingival plaque
293
382
+
Leu
TAA
[ENA]
¢þ
>WENV181068227
ODZI01191816
[ODZI] human metagenome; G_DNA_Supragingival plaque
192
103
-
Leu
TAA
[ENA]
¢þ
>WENV181077081
OEAP01024443
[OEAP] human metagenome; G_DNA_Supragingival plaque
1571
1482
-
Leu
TAA
[ENA]
¢þ
>WENV181082666
OEAV01000242
[OEAV] human metagenome; G_DNA_Supragingival plaque
34049
33960
-
Leu
TAA
[ENA]
¢þ
>WENV181137958
OEGJ01055419
[OEGJ] human metagenome; G_DNA_Supragingival plaque
504
415
-
Leu
TAA
[ENA]
¢þ
>WENV181156548
OEIE01028646
[OEIE] human metagenome; G_DNA_Supragingival plaque
497
408
-
Leu
TAA
[ENA]
¢þ
>WENV181160608
OEIK01016886
[OEIK] human metagenome; G_DNA_Supragingival plaque
294
383
+
Leu
TAA
[ENA]
¢þ
>WENV181181006
OEJU01003095
[OEJU] human metagenome; G_DNA_Supragingival plaque
5264
5175
-
Leu
TAA
[ENA]
¢þ
>C181038335
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
1629639
1629550
-
Leu
TAA
-
¡û
>C181061478
CP022278
Betaproteobacteria
Neisseria chenwenguii 10023 [CP022278]
1834431
1834520
+
Leu
TAA
-
¡û
>C181081295
CP023429
Betaproteobacteria
Neisseria weixii 10022 [CP023429]
721589
721500
-
Leu
TAA
-
¡û
>C181224100
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
830709
830798
+
Leu
TAA
-
¡û
>C191211116
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
1971408
1971319
-
Leu
TAA
-
¡û
>C191213644
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
1701579
1701668
+
Leu
TAA
-
¡û
>C191214496
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
735150
735061
-
Leu
TAA
-
¡û
>W1810052212
PDBT02000056
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
290
201
-
Leu
TAA
[ENA]
¡û
>W1810120631
PHTC01000018
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
422
333
-
Leu
TAA
[ENA]
¡û
>W1810227213
POXE01000005
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
3548
3637
+
Leu
TAA
[ENA]
¡û
>W1810227245
POXF01000001
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
401458
401369
-
Leu
TAA
[ENA]
¡û
>W1810227398
POXI01000001
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
447387
447298
-
Leu
TAA
[ENA]
¡û
>W1810227892
POXR01000003
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
133960
133871
-
Leu
TAA
[ENA]
¡û
>W1810228019
POXU01000001
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
128609
128698
+
Leu
TAA
[ENA]
¡û
>W1810228454
POYC01000003
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
179825
179736
-
Leu
TAA
[ENA]
¡û
>W10112070
ADEA01000008
Betaproteobacteria
Neisseria sp. oral taxon 014 oral taxon 014 str. F0314 [ADEA]
21993
22082
+
Leu
TAA
[ENA]
¡û
>W11115047
ADEA01000008
Betaproteobacteria
Neisseria sp. oral taxon 014 oral taxon 014 str. F0314 [ADEA]
21993
22082
+
Leu
TAA
[ENA]
¡û
>W1511398401
JTDO01000005
Betaproteobacteria
Neisseria arctica KH1503 [JTDO]
131280
131369
+
Leu
TAA
[ENA]
¡û
>W11175906
AFWQ01000003
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
128382
128471
+
Leu
TAA
[ENA]
¡û
>W11175975
AFWR01000034
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
62729
62640
-
Leu
TAA
[ENA]
¡û
>C161109159
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
1446953
1446864
-
Leu
TAA
[Ensembl]
¡û
>W1610617997
LGZA01000028
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
27900
27989
+
Leu
TAA
[ENA]
¡û
>W1710744172
LGZA01000028
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
27900
27989
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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