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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300982 (36 seq.)
>W1712110528
NJIH01000006
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
389251
389326
+
Lys
TTT
[ENA]
¡û
>C171119378
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
2195910
2195835
-
Lys
TTT
-
¡û
>WENV181307942
OFIS01000051
[OFIS] sludge metagenome; sludge
111185
111110
-
Lys
TTT
[ENA]
¢þ
>WENV181311753
OFJB01010852
[OFJB] sludge metagenome; sludge
1707
1632
-
Lys
TTT
[ENA]
¢þ
>WENV181401557
OFTX01000920
[OFTX] sludge metagenome; sludge
8252
8177
-
Lys
TTT
[ENA]
¢þ
>WENV181402542
OFTY01003724
[OFTY] sludge metagenome; sludge
2254
2179
-
Lys
TTT
[ENA]
¢þ
>WENV183729602
PJTQ01087070
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
105
180
+
Lys
TTT
[ENA]
¢þ
>WENV183740274
PJUF01000946
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
16275
16200
-
Lys
TTT
[ENA]
¢þ
>WENV170688289
LFRM01237987
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
193
268
+
Lys
TTT
[ENA]
¢þ
>WENV170707238
LNAP01015834
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8728
8653
-
Lys
TTT
[ENA]
¢þ
>WENV170707365
LNAP01018726
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3666
3591
-
Lys
TTT
[ENA]
¢þ
>WENV170708078
LNAP01048597
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19
94
+
Lys
TTT
[ENA]
¢þ
>C191023141
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
2006094
2006019
-
Lys
TTT
-
¡û
>C191029541
CP025068
Betaproteobacteria
Bordetella parapertussis B144 [CP025068]
4023176
4023101
-
Lys
TTT
-
¡û
>C191032798
CP025356
Betaproteobacteria
Bordetella pertussis H034 [CP025356]
3051660
3051735
+
Lys
TTT
-
¡û
>C191032870
CP025357
Betaproteobacteria
Bordetella pertussis F578 [CP025357]
1079451
1079376
-
Lys
TTT
-
¡û
>C191033751
CP025375
Betaproteobacteria
Bordetella pertussis I439 [CP025375]
2966700
2966775
+
Lys
TTT
-
¡û
>C191036084
CP025525
Betaproteobacteria
Bordetella pertussis I420 [CP025525]
2969847
2969922
+
Lys
TTT
-
¡û
>C191042425
CP026431
Betaproteobacteria
Bordetella pertussis J363 [CP026431]
2971353
2971428
+
Lys
TTT
-
¡û
>C191042598
CP026434
Betaproteobacteria
Bordetella pertussis J357 [CP026434]
1028999
1028924
-
Lys
TTT
-
¡û
>C191042873
CP026440
Betaproteobacteria
Bordetella pertussis J323 [CP026440]
2967750
2967825
+
Lys
TTT
-
¡û
>C191044247
CP026467
Betaproteobacteria
Bordetella pertussis J401 [CP026467]
1090931
1090856
-
Lys
TTT
-
¡û
>C191045620
CP026624
Betaproteobacteria
Bordetella pertussis J525 [CP026624]
2966618
2966693
+
Lys
TTT
-
¡û
>C191045945
CP026630
Betaproteobacteria
Bordetella pertussis J378 [CP026630]
1086147
1086072
-
Lys
TTT
-
¡û
>C191047200
CP026888
Betaproteobacteria
Bordetella pertussis J695 [CP026888]
2964621
2964696
+
Lys
TTT
-
¡û
>C191047519
CP026894
Betaproteobacteria
Bordetella pertussis J683 [CP026894]
1091981
1091906
-
Lys
TTT
-
¡û
>C191047797
CP026900
Betaproteobacteria
Bordetella pertussis J656 [CP026900]
2964897
2964972
+
Lys
TTT
-
¡û
>C191207007
LR134329
Betaproteobacteria
Bordetella parapertussis NCTC10524 [LR134329]
310177
310102
-
Lys
TTT
-
¡û
>W1810062082
PDNV01000002
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
403268
403193
-
Lys
TTT
[ENA]
¡û
>W1810062143
PDNW01000016
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
53516
53441
-
Lys
TTT
[ENA]
¡û
>W1810089043
PGEK01000026
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
21573
21498
-
Lys
TTT
[ENA]
¡û
>C151101346
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
3605733
3605658
-
Lys
TTT
[Ensembl]
¡û
>C11118182
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
36875
36950
+
Lys
TTT
[Ensembl]
¡û
>W1610074266
BCWN01000016
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
21485
21410
-
Lys
TTT
[ENA]
¡û
>W1710071384
BCWN01000016
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
21485
21410
-
Lys
TTT
[ENA]
¡û
>W1710586406
FQXE01000006
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
13188
13263
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK