This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301005 (50 seq.)
>W1711121919
LUID01000099
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LUID]
2
77
+
Ala
TGC
[ENA]
¡û
>W1711467075
MJNC01000002
Gammaproteobacteria
Buchnera aphidicola (Myzus persicae) [MJNC]
29838
29912
+
Ala
TGC
[ENA]
¡û
>W1711513370
MLFQ01000648
Gammaproteobacteria
Mixta gaviniae [MLFQ]
129
54
-
Ala
TGC
[ENA]
¡û
>C171130369
LT635893
Gammaproteobacteria
Buchnera aphidicola Bcipseudotaxifoliae [LT635893]
197643
197715
+
Ala
TGC
-
¡û
>C171130400
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
195827
195899
+
Ala
TGC
-
¡û
>C171130431
LT667503
Gammaproteobacteria
Buchnera aphidicola Bciconfinis [LT667503]
196352
196424
+
Ala
TGC
-
¡û
>C001869
AE013218
Gammaproteobacteria
Buchnera aphidicola str. Sg [Schizaphis graminum] [AE013218]
277221
277293
+
Ala
TGC
[Ensembl]
¡û
>C004625
BA000003
Gammaproteobacteria
Buchnera aphidicola str. APS [Acyrthosiphon pisum] [BA000003]
275731
275803
+
Ala
TGC
[Ensembl]
¡û
>WENV181405317
OGCD01000510
[OGCD] insect metagenome; haemolymph
330
258
-
Ala
TGC
[ENA]
¢þ
>WENV170312062
CESM01216604
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1001
926
-
Ala
TGC
[ENA]
¢þ
>WENV170468850
CEVF01065976
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
215
140
-
Ala
TGC
[ENA]
¢þ
>WENV170469468
CEVF01118156
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
245
320
+
Ala
TGC
[ENA]
¢þ
>WENV170471877
CEVG01116920
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
285
+
Ala
TGC
[ENA]
¢þ
>WENV170563879
CZCB01033408
[CZCB] anaerobic digester metagenome; anaerobic digester
892
817
-
Ala
TGC
[ENA]
¢þ
>WENV170584875
FUFK010244518
[FUFK] metagenome; unknown
571
496
-
Ala
TGC
[ENA]
¢þ
>WENV170586906
FUFK010452760
[FUFK] metagenome; unknown
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV170589131
FUFK010619433
[FUFK] metagenome; unknown
333
258
-
Ala
TGC
[ENA]
¢þ
>C181176059
CP029205
Gammaproteobacteria
Buchnera aphidicola [Schizaphis graminum] [CP029205]
335403
335331
-
Ala
TGC
-
¡û
>C191094400
CP032759
Gammaproteobacteria
Buchnera aphidicola [Rhopalosiphum maidis] BTI [CP032759]
502294
502220
-
Ala
TGC
-
¡û
>C191098033
CP032996
Gammaproteobacteria
Buchnera aphidicola [Therioaphis trifolii] Tma [CP032996]
189343
189415
+
Ala
TGC
-
¡û
>C191098065
CP033006
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum euphorbiae] Meu [CP033006]
277805
277877
+
Ala
TGC
-
¡û
>C191132436
CP034855
Gammaproteobacteria
Buchnera aphidicola [Sitobion avenae] Sav [CP034855]
273828
273902
+
Ala
TGC
-
¡û
>C191132500
CP034867
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum gaurae] Mga [CP034867]
277248
277322
+
Ala
TGC
-
¡û
>C191132532
CP034873
Gammaproteobacteria
Buchnera aphidicola [Hyadaphis tataricae] Hta [CP034873]
272742
272816
+
Ala
TGC
-
¡û
>C191132564
CP034894
Gammaproteobacteria
Buchnera aphidicola [Aphis helianthi] Ahe [CP034894]
274451
274523
+
Ala
TGC
-
¡û
>C191132596
CP034897
Gammaproteobacteria
Buchnera aphidicola [Aphis craccivora] Acr [CP034897]
274064
274138
+
Ala
TGC
-
¡û
>C09101319
CP001161
Gammaproteobacteria
Buchnera aphidicola str. 5A [Acyrthosiphon pisum] [CP001161]
276878
276952
+
Ala
TGC
[Ensembl]
¡û
>C09101351
CP001158
Gammaproteobacteria
Buchnera aphidicola str. Tuc7 [Acyrthosiphon pisum] [CP001158]
276887
276961
+
Ala
TGC
[Ensembl]
¡û
>W1910657509
MASH01000013
Gammaproteobacteria
Arsenophonus endosymbiont of Bemisia tabaci of Bemisia tabaci Asia II 3 [MASH]
551
476
-
Ala
TGC
[ENA]
¡û
>W1911190139
NQWO01000043
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Blockley NCTR361 [NQWO]
71
146
+
Ala
TGC
[ENA]
¡û
>W1810257764
PQJX01000080
Gammaproteobacteria
Pantoea sp. PSNIH5 [PQJX]
259
184
-
Ala
TGC
[ENA]
¡û
>W1810390261
PXYH01000057
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
289
214
-
Ala
TGC
[ENA]
¡û
>W1810779466
QQOH01000013
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
275
200
-
Ala
TGC
[ENA]
¡û
>C151003509
CP002697
Gammaproteobacteria
Buchnera aphidicola str. USDA [Myzus persicae] [CP002697]
277422
277496
+
Ala
TGC
[Ensembl]
¡û
>C151003541
CP002699
Gammaproteobacteria
Buchnera aphidicola str. W106 [Myzus persicae] [CP002699]
277422
277496
+
Ala
TGC
[Ensembl]
¡û
>C151003605
CP002703
Gammaproteobacteria
Buchnera aphidicola str. F009 [Myzus persicae] [CP002703]
277422
277496
+
Ala
TGC
[Ensembl]
¡û
>C151009205
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
3911009
3910934
-
Ala
TGC
[Ensembl]
¡û
>C151046571
CP009253
Gammaproteobacteria
Buchnera aphidicola [Aphis glycines] BAg [CP009253]
273316
273390
+
Ala
TGC
-
¡û
>C151086330
CP011787
Gammaproteobacteria
Candidatus Baumannia cicadellinicola B-GSS [CP011787]
441667
441740
+
Ala
TGC
-
¡û
>C11101991
CP002303
Gammaproteobacteria
Buchnera aphidicola str. JF98 [Acyrthosiphon pisum] [CP002303]
276929
277001
+
Ala
TGC
[Ensembl]
¡û
>C11102020
CP002302
Gammaproteobacteria
Buchnera aphidicola str. JF99 [Acyrthosiphon pisum] [CP002302]
276884
276958
+
Ala
TGC
[Ensembl]
¡û
>C11102052
CP002300
Gammaproteobacteria
Buchnera aphidicola str. LL01 [Acyrthosiphon pisum] [CP002300]
276889
276963
+
Ala
TGC
[Ensembl]
¡û
>C11102084
CP002301
Gammaproteobacteria
Buchnera aphidicola str. TLW03 [Acyrthosiphon pisum] [CP002301]
276862
276936
+
Ala
TGC
[Ensembl]
¡û
>C11102116
CP002648
Gammaproteobacteria
Buchnera aphidicola str. Ua [Uroleucon ambrosiae] [CP002648]
262913
262987
+
Ala
TGC
[Ensembl]
¡û
>C11102148
CP002645
Gammaproteobacteria
Buchnera aphidicola str. Ak [Acyrthosiphon kondoi] [CP002645]
276827
276901
+
Ala
TGC
[Ensembl]
¡û
>C161107304
LN890285
Gammaproteobacteria
Buchnera aphidicola BTs [LN890285]
189893
189965
+
Ala
TGC
-
¡û
>C161108572
LN999831
Gammaproteobacteria
Candidatus Mikella endobia [LN999831]
173641
173715
+
Ala
TGC
[Ensembl]
¡û
>W1610932965
LUID01000099
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LUID]
2
77
+
Ala
TGC
[ENA]
¡û
>ENV004283
DQ834350
Environmental sample from ENV division of INSDC
1277
1354
+
Ala
TGC
[ENA]
>ENV004286
DQ834353
Environmental sample from ENV division of INSDC
1275
1352
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK