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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301036 (60 seq.)
>W1710805852
LKAJ01000010
Gammaproteobacteria
Candidatus Berkiella aquae HT99 [LKAJ]
109548
109624
+
Ile
GAT
[ENA]
¡û
>C171063359
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
1893705
1893781
+
Ile
GAT
-
¡û
>C171063362
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
2259244
2259320
+
Ile
GAT
-
¡û
>WENV180295158
OBIZ01030795
[OBIZ] soil metagenome; soil
319
395
+
Ile
GAT
[ENA]
¢þ
>WENV180320579
OBKQ01000205
[OBKQ] soil metagenome; Clay
1774
1850
+
Ile
GAT
[ENA]
¢þ
>WENV180342327
OBLJ01005698
[OBLJ] soil metagenome; Clay
1421
1345
-
Ile
GAT
[ENA]
¢þ
>WENV180351234
OBLQ010034982
[OBLQ] soil metagenome; soil
261
337
+
Ile
GAT
[ENA]
¢þ
>WENV180356342
OBNK01015447
[OBNK] sediment metagenome; sediment
118
194
+
Ile
GAT
[ENA]
¢þ
>WENV181170063
OEIV010021973
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1540
1464
-
Ile
GAT
[ENA]
¢þ
>WENV181285832
OFGU01000835
[OFGU] soil metagenome; Clay
3330
3254
-
Ile
GAT
[ENA]
¢þ
>WENV181286174
OFGV01001795
[OFGV] soil metagenome; Clay
597
673
+
Ile
GAT
[ENA]
¢þ
>WENV181291774
OFHD01000717
[OFHD] soil metagenome; Clay
3380
3456
+
Ile
GAT
[ENA]
¢þ
>WENV181292551
OFHF01000388
[OFHF] soil metagenome; Clay
4334
4258
-
Ile
GAT
[ENA]
¢þ
>WENV181293125
OFHG01000059
[OFHG] soil metagenome; Clay
41972
42048
+
Ile
GAT
[ENA]
¢þ
>WENV181294341
OFHH01000323
[OFHH] soil metagenome; Clay
4326
4250
-
Ile
GAT
[ENA]
¢þ
>WENV181296837
OFHK01000623
[OFHK] soil metagenome; Clay
5854
5778
-
Ile
GAT
[ENA]
¢þ
>WENV181412448
OGCK01000354
[OGCK] hot springs metagenome; hot spring sediment
8255
8331
+
Ile
GAT
[ENA]
¢þ
>WENV181415524
OGCL01013474
[OGCL] hot springs metagenome; Hot spring water
2346
2270
-
Ile
GAT
[ENA]
¢þ
>W141170525
AXYI01000004
Gammaproteobacteria
Xanthomonadaceae bacterium JGI 0001020-F16 [AXYI]
49542
49618
+
Ile
GAT
[ENA]
¡û
>WENV182575654
OJFV01002031
[OJFV] seawater metagenome; Sea water
262
186
-
Ile
GAT
[ENA]
¢þ
>WENV170604101
FUWD010363993
[FUWD] metagenome; unknown
5
81
+
Ile
GAT
[ENA]
¢þ
>WENV170712057
LNFM01009490
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3736
3660
-
Ile
GAT
[ENA]
¢þ
>WENV170977962
MTKZ01036969
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1171
1095
-
Ile
GAT
[ENA]
¢þ
>C181033861
CP018889
Gammaproteobacteria
Beggiatoa leptomitoformis D-401 [CP018889]
2709983
2710059
+
Ile
GAT
-
¡û
>C181033883
CP018889
Gammaproteobacteria
Beggiatoa leptomitoformis D-401 [CP018889]
2040357
2040281
-
Ile
GAT
-
¡û
>C191004408
AP018724
Gammaproteobacteria
Sulfurivermis fontis JG42 [AP018724]
605907
605983
+
Ile
GAT
-
¡û
>C191004410
AP018724
Gammaproteobacteria
Sulfurivermis fontis JG42 [AP018724]
611504
611580
+
Ile
GAT
-
¡û
>C191186017
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
4350686
4350610
-
Ile
GAT
-
¡û
>C191186020
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
3979870
3979794
-
Ile
GAT
-
¡û
>W141820683
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
1334625
1334701
+
Ile
GAT
[ENA]
¡û
>W141820686
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
1667467
1667543
+
Ile
GAT
[ENA]
¡û
>W141820805
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
4364646
4364570
-
Ile
GAT
[ENA]
¡û
>W141820808
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
3958779
3958703
-
Ile
GAT
[ENA]
¡û
>W141821247
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
2562235
2562311
+
Ile
GAT
[ENA]
¡û
>W141821250
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
2968102
2968178
+
Ile
GAT
[ENA]
¡û
>W1810390172
PXYG01000028
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
271
195
-
Ile
GAT
[ENA]
¡û
>W1810477598
QAOX01000018
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
3531
3455
-
Ile
GAT
[ENA]
¡û
>W1810533104
QCZE01000011
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
208
284
+
Ile
GAT
[ENA]
¡û
>W1810533109
QCZE01000022
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
268
344
+
Ile
GAT
[ENA]
¡û
>W1511305225
JPLD01000006
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
775
851
+
Ile
GAT
[ENA]
¡û
>W1511433881
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
173817
173893
+
Ile
GAT
[ENA]
¡û
>W1511433884
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
577284
577360
+
Ile
GAT
[ENA]
¡û
>W1511547598
JZRB01000066
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
1874
1950
+
Ile
GAT
[ENA]
¡û
>C161041419
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3678813
3678889
+
Ile
GAT
[Ensembl]
¡û
>C161041434
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3009180
3009104
-
Ile
GAT
[Ensembl]
¡û
>W121036399
AHMA01000017
Gammaproteobacteria
Beggiatoa alba B18LD [AHMA]
213467
213391
-
Ile
GAT
[ENA]
¡û
>W1610616777
LGRQ01000052
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
3943
4019
+
Ile
GAT
[ENA]
¡û
>W1610669709
LKAJ01000010
Gammaproteobacteria
Candidatus Berkiella aquae HT99 [LKAJ]
109548
109624
+
Ile
GAT
[ENA]
¡û
>ENV000039
AB222626
Environmental sample from ENV division of INSDC
383
305
-
Ile
GAT
[ENA]
>ENV000923
AY172146
Environmental sample from ENV division of INSDC
598
674
+
Ile
GAT
[ENA]
>ENV000929
AY172149
Environmental sample from ENV division of INSDC
598
674
+
Ile
GAT
[ENA]
>ENV000931
AY172150
Environmental sample from ENV division of INSDC
598
674
+
Ile
GAT
[ENA]
>W1710515295
FNBR01000012
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
2753
2677
-
Ile
GAT
[ENA]
¡û
>W1710545827
FOBU01000008
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
3498
3422
-
Ile
GAT
[ENA]
¡û
>W1710548728
FODZ01000015
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
1598
1674
+
Ile
GAT
[ENA]
¡û
>W1710555195
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
2502608
2502532
-
Ile
GAT
[ENA]
¡û
>W1710555225
FOJE01000004
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
340992
341068
+
Ile
GAT
[ENA]
¡û
>W1710579689
FPIS01000009
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
3497
3421
-
Ile
GAT
[ENA]
¡û
>W1710603085
FUYT01000028
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
3488
3412
-
Ile
GAT
[ENA]
¡û
>W1710742116
LGRQ01000052
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
3943
4019
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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