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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301059 (37 seq.)
>W1711724126
MTPX01000025
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
1794
1869
+
Arg
TCT
[ENA]
¡û
>W1711774084
MVIV01000010
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
28356
28281
-
Arg
TCT
[ENA]
¡û
>W1711774102
MVIW01000003
Actinomycetota
Actinomyces denticolens [MVIW]
77071
76996
-
Arg
TCT
[ENA]
¡û
>C171108517
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
690225
690300
+
Arg
TCT
-
¡û
>WENV180137453
OATO01033647
[OATO] human gut metagenome; faeces
338
263
-
Arg
TCT
[ENA]
¢þ
>WENV180190733
OAXA01000699
[OAXA] human gut metagenome; faeces
2445
2370
-
Arg
TCT
[ENA]
¢þ
>W141024099
AKGF01000023
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
59418
59493
+
Arg
TCT
[ENA]
¡û
>WENV180420957
OBVP01000745
[OBVP] human gut metagenome; faeces
2971
3046
+
Arg
TCT
[ENA]
¢þ
>W141206196
AZLV01000931
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
3821
3746
-
Arg
TCT
[ENA]
¡û
>WENV182814968
OJYO01000111
[OJYO] human gut metagenome; human gut
21809
21884
+
Arg
TCT
[ENA]
¢þ
>WENV182822906
OKBP01000080
[OKBP] human gut metagenome; human gut
13059
13134
+
Arg
TCT
[ENA]
¢þ
>WENV182823012
OKBQ01000918
[OKBQ] human gut metagenome; human gut
776
701
-
Arg
TCT
[ENA]
¢þ
>WENV182845971
OKJI01000056
[OKJI] human gut metagenome; human gut
12112
12037
-
Arg
TCT
[ENA]
¢þ
>WENV182846422
OKJM01000307
[OKJM] human gut metagenome; human gut
1424
1499
+
Arg
TCT
[ENA]
¢þ
>WENV182854932
OKMX01000129
[OKMX] human gut metagenome; human gut
8726
8651
-
Arg
TCT
[ENA]
¢þ
>WENV182961243
OKWK01000557
[OKWK] human gut metagenome; stool
13064
13139
+
Arg
TCT
[ENA]
¢þ
>WENV183721567
PDWJ01075585
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1704
1631
-
Arg
TCT
[ENA]
¢þ
>C181003398
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1979501
1979427
-
Arg
TCT
-
¡û
>C181160797
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
2597646
2597721
+
Arg
TCT
-
¡û
>C191030383
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
2678353
2678428
+
Arg
TCT
-
¡û
>C191164729
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
2351245
2351320
+
Arg
TCT
-
¡û
>C191208269
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
3128115
3128040
-
Arg
TCT
-
¡û
>C191208609
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
511080
511155
+
Arg
TCT
-
¡û
>W09121403
ACFH01000003
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
21381
21456
+
Arg
TCT
[ENA]
¡û
>W1910281447
FQTT01000011
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
132647
132722
+
Arg
TCT
[ENA]
¡û
>W1911798534
QYRR01000004
Actinomycetota
Actinomyces sp. 2119 [QYRR]
285408
285333
-
Arg
TCT
[ENA]
¡û
>W1810186634
PKHA01000015
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
13121
13196
+
Arg
TCT
[ENA]
¡û
>W1810238711
PPPL01000004
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
14520
14595
+
Arg
TCT
[ENA]
¡û
>W1810705143
QMIN01000061
Actinomycetota
Actinomyces sp. Z5 [QMIN]
11041
11116
+
Arg
TCT
[ENA]
¡û
>W1810705170
QMIO01000005
Actinomycetota
Actinomyces sp. Z3 [QMIO]
51571
51646
+
Arg
TCT
[ENA]
¡û
>W1511350889
JRMT01000028
Actinomycetota
Actinomyces urogenitalis S6-C4 [JRMT]
12062
11987
-
Arg
TCT
[ENA]
¡û
>W1511444705
JUUL01000109
Actinomycetota
Actinomyces urogenitalis 752_PACI [JUUL]
24246
24171
-
Arg
TCT
[ENA]
¡û
>W1511476011
JWEC01000334
Actinomycetota
Xylanimonas cellulosilytica 107_XCEL [JWEC]
13027
13102
+
Arg
TCT
[ENA]
¡û
>W1710082798
BDIO01000003
Actinomycetota
Actinomyces denticolens [BDIO]
292711
292786
+
Arg
TCT
[ENA]
¡û
>W1710523252
FNHU01000017
Actinomycetota
Actinomyces ruminicola [FNHU]
46133
46208
+
Arg
TCT
[ENA]
¡û
>W1710524117
FNIM01000001
Actinomycetota
Actinomyces ruminicola [FNIM]
311355
311430
+
Arg
TCT
[ENA]
¡û
>W1710587376
FQYL01000004
Actinomycetota
Actinomyces denticolens [FQYL]
221772
221697
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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