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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301131 (17 seq.)
>W141242082
CAHY01000009
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
170749
170825
+
Asn
GTT
[ENA]
¡û
>WENV182553877
OJCR01045500
[OJCR] seawater metagenome; Sea water
160
84
-
Asn
GTT
[ENA]
¢þ
>WENV182567703
OJEP01000066
[OJEP] seawater metagenome; Sea water
77047
77123
+
Asn
GTT
[ENA]
¢þ
>WENV182579573
OJGS01025306
[OJGS] seawater metagenome; Sea water
743
819
+
Asn
GTT
[ENA]
¢þ
>WENV182580679
OJGW01007351
[OJGW] seawater metagenome; Sea water
172
96
-
Asn
GTT
[ENA]
¢þ
>WENV182592633
OJIR01006274
[OJIR] seawater metagenome; Sea water
158
82
-
Asn
GTT
[ENA]
¢þ
>WENV183061015
OLHY01027336
[OLHY] seawater metagenome; Sea water
737
813
+
Asn
GTT
[ENA]
¢þ
>WENV170025108
BCQL01219679
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
172
96
-
Asn
GTT
[ENA]
¢þ
>C191217684
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1395017
1394941
-
Asn
GTT
-
¡û
>W1911641196
PYHU01000005
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
181222
181298
+
Asn
GTT
[ENA]
¡û
>C11100847
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2810447
2810523
+
Asn
GTT
[Ensembl]
¡û
>C161051405
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2653724
2653800
+
Asn
GTT
[Ensembl]
¡û
>C161062060
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
2128032
2128108
+
Asn
GTT
-
¡û
>C161062233
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
2171590
2171666
+
Asn
GTT
-
¡û
>C161071049
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
2183866
2183942
+
Asn
GTT
-
¡û
>C161086257
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4426939
4427015
+
Asn
GTT
-
¡û
>C161086330
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
3744517
3744441
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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