This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301178 (54 seq.)
>W1710852862
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
339548
339624
+
His
GTG
[ENA]
¡û
>W1710852963
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
83422
83498
+
His
GTG
[ENA]
¡û
>W1710859363
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
349376
349452
+
His
GTG
[ENA]
¡û
>W1710859425
LMCD01000005
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
59587
59663
+
His
GTG
[ENA]
¡û
>W1710859484
LMCE01000043
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
59681
59757
+
His
GTG
[ENA]
¡û
>W1710859607
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
226835
226911
+
His
GTG
[ENA]
¡û
>W1710859655
LMCH01000002
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
111940
111864
-
His
GTG
[ENA]
¡û
>W1710859743
LMCI01000035
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
88670
88746
+
His
GTG
[ENA]
¡û
>W1710859826
LMCJ01000064
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
139983
139907
-
His
GTG
[ENA]
¡û
>W1711424967
MIEL01000026
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
98713
98637
-
His
GTG
[ENA]
¡û
>W1711510411
MLAX01000001
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
730703
730779
+
His
GTG
[ENA]
¡û
>W1711827033
MXQE01000006
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
131657
131581
-
His
GTG
[ENA]
¡û
>C171097480
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
1528406
1528330
-
His
GTG
-
¡û
>W131181133
ARNQ01000046
Alphaproteobacteria
Pannonibacter phragmitetus DSM 14782 [ARNQ]
834610
834534
-
His
GTG
[ENA]
¡û
>w020463
AAUW01000030
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
37270
37346
+
His
GTG
[ENA]
¡û
>W141152648
AXBY01000045
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
638638
638562
-
His
GTG
[ENA]
¡û
>W141152958
AXCE01000062
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
111228
111304
+
His
GTG
[ENA]
¡û
>WENV170727940
LULE01004865
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
2110
2186
+
His
GTG
[ENA]
¢þ
>WENV170779776
LZQR01000559
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2195
2271
+
His
GTG
[ENA]
¢þ
>WENV170840802
MDSZ01211526
[MDSZ] marine metagenome; seawater
2561
2637
+
His
GTG
[ENA]
¢þ
>WENV170962345
MRWF01012709
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
98602
98678
+
His
GTG
[ENA]
¢þ
>WENV170963914
MRWG01001352
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
32904
32828
-
His
GTG
[ENA]
¢þ
>C181067712
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
5416543
5416619
+
His
GTG
-
¡û
>C191188408
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
5984583
5984507
-
His
GTG
-
¡û
>W09112057
ABXL01000050
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
116330
116254
-
His
GTG
[ENA]
¡û
>W09118279
ACCU01000016
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
258179
258255
+
His
GTG
[ENA]
¡û
>W1910285221
FREX01000011
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
71312
71388
+
His
GTG
[ENA]
¡û
>W1911538946
OMPG01000002
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
60992
61068
+
His
GTG
[ENA]
¡û
>W11135840
AEFL01000004
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
771
847
+
His
GTG
[ENA]
¡û
>C121006661
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
1321810
1321886
+
His
GTG
[Ensembl]
¡û
>C161037935
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
5165958
5165882
-
His
GTG
-
¡û
>W1610042874
BAZK01000014
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
111709
111633
-
His
GTG
[ENA]
¡û
>W1610092000
CXST01000002
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
763236
763312
+
His
GTG
[ENA]
¡û
>W1610092206
CXWD01000002
Alphaproteobacteria
Roseibium alexandrii [CXWD]
48563
48487
-
His
GTG
[ENA]
¡û
>W1610540271
JSEP01000002
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
446508
446432
-
His
GTG
[ENA]
¡û
>W1610585618
LCWX01000216
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
104978
104902
-
His
GTG
[ENA]
¡û
>W1610716001
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
339548
339624
+
His
GTG
[ENA]
¡û
>W1610716102
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
83422
83498
+
His
GTG
[ENA]
¡û
>W1610721709
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
349376
349452
+
His
GTG
[ENA]
¡û
>W1610721771
LMCD01000005
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
59587
59663
+
His
GTG
[ENA]
¡û
>W1610721830
LMCE01000043
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
59681
59757
+
His
GTG
[ENA]
¡û
>W1610721953
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
226835
226911
+
His
GTG
[ENA]
¡û
>W1610722001
LMCH01000002
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
111940
111864
-
His
GTG
[ENA]
¡û
>W1610722089
LMCI01000035
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
88670
88746
+
His
GTG
[ENA]
¡û
>W1610722172
LMCJ01000064
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
139983
139907
-
His
GTG
[ENA]
¡û
>W1710040034
BAZK01000014
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
111709
111633
-
His
GTG
[ENA]
¡û
>W1710095357
CXST01000002
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
763236
763312
+
His
GTG
[ENA]
¡û
>W1710095563
CXWD01000002
Alphaproteobacteria
Roseibium alexandrii [CXWD]
48563
48487
-
His
GTG
[ENA]
¡û
>W1710567021
FOSK01000004
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
113863
113787
-
His
GTG
[ENA]
¡û
>W1710577902
FPBD01000006
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
111844
111768
-
His
GTG
[ENA]
¡û
>W1710591627
FRBW01000001
Alphaproteobacteria
Roseibium suaedae [FRBW]
594399
594475
+
His
GTG
[ENA]
¡û
>W1710643292
JSEP01000002
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
446508
446432
-
His
GTG
[ENA]
¡û
>W1710660274
JXMT01000105
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
8629
8705
+
His
GTG
[ENA]
¡û
>W1710704809
LCWX01000216
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
104978
104902
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK