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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301234 (17 seq.)
>W1711404404
MFYK01000004
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
2007
1932
-
Met
CAT
[ENA]
¡û
>W1711404543
MFYN01000035
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
6009
6084
+
Met
CAT
[ENA]
¡û
>WENV181383564
OFRG01043982
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
352
427
+
Met
CAT
[ENA]
¢þ
>WENV183693767
ORMF012133503
[ORMF] groundwater metagenome; groundwater
2292
2217
-
Met
CAT
[ENA]
¢þ
>WENV170557153
CXWL01020286
[CXWL] groundwater metagenome; biofilm material
1578
1653
+
Met
CAT
[ENA]
¢þ
>WENV170576590
FRDC01001015
[FRDC] freshwater metagenome; water
23729
23654
-
Met
CAT
[ENA]
¢þ
>W1910716956
MFXP01000006
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
31911
31986
+
Met
CAT
[ENA]
¡û
>W1910716989
MFXQ01000002
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_9 [MFXQ]
23596
23671
+
Met
CAT
[ENA]
¡û
>W1910717068
MFXS01000005
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_55_13 [MFXS]
27436
27511
+
Met
CAT
[ENA]
¡û
>W1910717247
MFXW01000069
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_53_20 [MFXW]
2398
2323
-
Met
CAT
[ENA]
¡û
>W1910717420
MFYB01000023
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_53_10 [MFYB]
6875
6950
+
Met
CAT
[ENA]
¡û
>W1910717551
MFYF01000004
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_53_10 [MFYF]
3076
3001
-
Met
CAT
[ENA]
¡û
>C161050438
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
654760
654835
+
Met
CAT
-
¡û
>C161050482
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
654915
654990
+
Met
CAT
-
¡û
>C161050526
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
654846
654921
+
Met
CAT
-
¡û
>C161050570
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
654639
654714
+
Met
CAT
-
¡û
>C161050614
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
654914
654989
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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