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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301329 (55 seq.)
>W1711027073
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
90278
90354
+
Pro
TGG
[ENA]
¡û
>W1711027088
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12339
12263
-
Pro
TGG
[ENA]
¡û
>W1711027089
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12197
12121
-
Pro
TGG
[ENA]
¡û
>W1711027090
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12055
11979
-
Pro
TGG
[ENA]
¡û
>W1711624551
MPHK01000002
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
142662
142586
-
Pro
TGG
[ENA]
¡û
>W1711624601
MPHK01000017
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
631
555
-
Pro
TGG
[ENA]
¡û
>W1711624602
MPHK01000017
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
392
316
-
Pro
TGG
[ENA]
¡û
>C021940
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
474015
474091
+
Pro
TGG
[Ensembl]
¡û
>C021941
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
474157
474233
+
Pro
TGG
[Ensembl]
¡û
>C021942
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
474297
474373
+
Pro
TGG
[Ensembl]
¡û
>C022016
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3107936
3107860
-
Pro
TGG
[Ensembl]
¡û
>WENV170022090
BCQK01000083
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
6244
6320
+
Pro
TGG
[ENA]
¢þ
>C191117180
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
818581
818657
+
Pro
TGG
-
¡û
>C191117181
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
818719
818795
+
Pro
TGG
-
¡û
>C191117195
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1886778
1886854
+
Pro
TGG
-
¡û
>C191173239
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1707748
1707672
-
Pro
TGG
-
¡û
>C191173240
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1707612
1707536
-
Pro
TGG
-
¡û
>C191173259
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
508111
508035
-
Pro
TGG
-
¡û
>C191185828
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
458780
458856
+
Pro
TGG
-
¡û
>C191185829
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
458916
458992
+
Pro
TGG
-
¡û
>C191185848
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1558916
1558992
+
Pro
TGG
-
¡û
>W09103086
AAIV01000003
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
247055
246979
-
Pro
TGG
[ENA]
¡û
>W09103087
AAIV01000003
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
246913
246837
-
Pro
TGG
[ENA]
¡û
>W09103088
AAIV01000003
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
246773
246697
-
Pro
TGG
[ENA]
¡û
>W09103147
AAIV01000038
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
980
904
-
Pro
TGG
[ENA]
¡û
>W1910676720
MCTV01000010
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
14187
14111
-
Pro
TGG
[ENA]
¡û
>W1910676721
MCTV01000010
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
13948
13872
-
Pro
TGG
[ENA]
¡û
>W1910676736
MCTV01000026
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
82934
82858
-
Pro
TGG
[ENA]
¡û
>W1910676957
MCTY01000188
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
6405
6481
+
Pro
TGG
[ENA]
¡û
>W1910676958
MCTY01000188
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
6644
6720
+
Pro
TGG
[ENA]
¡û
>W1910676963
MCTY01000196
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
82848
82772
-
Pro
TGG
[ENA]
¡û
>W1910677487
MCUF01000045
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
16704
16628
-
Pro
TGG
[ENA]
¡û
>W1910677504
MCUF01000076
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
14048
13972
-
Pro
TGG
[ENA]
¡û
>W1910677505
MCUF01000076
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
13810
13734
-
Pro
TGG
[ENA]
¡û
>W1910679518
MCVG01000131
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14026
13950
-
Pro
TGG
[ENA]
¡û
>W1910679519
MCVG01000131
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
13787
13711
-
Pro
TGG
[ENA]
¡û
>W1910679529
MCVG01000171
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14612
14688
+
Pro
TGG
[ENA]
¡û
>W1910679651
MCVI01000015
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
12575
12499
-
Pro
TGG
[ENA]
¡û
>W1910679652
MCVI01000015
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
12337
12261
-
Pro
TGG
[ENA]
¡û
>W1910679654
MCVI01000016
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
128113
128189
+
Pro
TGG
[ENA]
¡û
>W1810157788
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
34024
33948
-
Pro
TGG
[ENA]
¡û
>W1810157789
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
33874
33798
-
Pro
TGG
[ENA]
¡û
>W1810157790
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
33724
33648
-
Pro
TGG
[ENA]
¡û
>W1810157791
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
12309
12233
-
Pro
TGG
[ENA]
¡û
>W1810157792
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
12159
12083
-
Pro
TGG
[ENA]
¡û
>W1810157793
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
12009
11933
-
Pro
TGG
[ENA]
¡û
>W1810157803
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
117541
117617
+
Pro
TGG
[ENA]
¡û
>W1810157834
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
220068
220144
+
Pro
TGG
[ENA]
¡û
>W1810157877
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
2713016
2712940
-
Pro
TGG
[ENA]
¡û
>W1810157878
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
2712874
2712798
-
Pro
TGG
[ENA]
¡û
>W1810157879
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
2712733
2712657
-
Pro
TGG
[ENA]
¡û
>W1610875185
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
90278
90354
+
Pro
TGG
[ENA]
¡û
>W1610875200
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12339
12263
-
Pro
TGG
[ENA]
¡û
>W1610875201
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12197
12121
-
Pro
TGG
[ENA]
¡û
>W1610875202
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12055
11979
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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