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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301331 (23 seq.)
>W1710821503
LKTL01000031
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
14563
14487
-
Arg
CCG
[ENA]
¡û
>W1711027086
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12569
12493
-
Arg
CCG
[ENA]
¡û
>W1711273441
LZFV01000004
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
16554
16478
-
Arg
CCG
[ENA]
¡û
>W1711624599
MPHK01000017
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
867
791
-
Arg
CCG
[ENA]
¡û
>C171108596
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4513227
4513151
-
Arg
CCG
-
¡û
>C021938
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
473790
473866
+
Arg
CCG
[Ensembl]
¡û
>WENV170022183
BCQK01001360
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
781
705
-
Arg
CCG
[ENA]
¢þ
>WENV170023616
BCQL01000223
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
5747
5671
-
Arg
CCG
[ENA]
¢þ
>C191117178
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
818350
818426
+
Arg
CCG
-
¡û
>C191173237
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1707983
1707907
-
Arg
CCG
-
¡û
>C191185826
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
458550
458626
+
Arg
CCG
-
¡û
>W09103084
AAIV01000003
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
247280
247204
-
Arg
CCG
[ENA]
¡û
>W1910676718
MCTV01000010
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
14423
14347
-
Arg
CCG
[ENA]
¡û
>W1910676955
MCTY01000188
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
6169
6245
+
Arg
CCG
[ENA]
¡û
>W1910677502
MCUF01000076
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
14266
14190
-
Arg
CCG
[ENA]
¡û
>W1910679516
MCVG01000131
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14262
14186
-
Arg
CCG
[ENA]
¡û
>W1910679649
MCVI01000015
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
12811
12735
-
Arg
CCG
[ENA]
¡û
>W1911710140
QPQU01000012
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
178043
178119
+
Arg
CCG
[ENA]
¡û
>W1810157786
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
34254
34178
-
Arg
CCG
[ENA]
¡û
>W1810157875
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
2713252
2713176
-
Arg
CCG
[ENA]
¡û
>W1610685465
LKTL01000031
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
14563
14487
-
Arg
CCG
[ENA]
¡û
>W1610875198
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12569
12493
-
Arg
CCG
[ENA]
¡û
>W1611032790
LZFV01000004
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
16554
16478
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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