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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301369 (47 seq.)
>W1711628071
MPNY01000013
Gammaproteobacteria
Solemya velum gill symbiont [MPNY]
50047
49972
-
Val
TAC
[ENA]
¡û
>W1711630539
MPQJ01000008
Gammaproteobacteria
Solemya velum gill symbiont [MPQJ]
20984
21059
+
Val
TAC
[ENA]
¡û
>W1711631481
MPRI01000006
Gammaproteobacteria
Solemya velum gill symbiont [MPRI]
20983
21058
+
Val
TAC
[ENA]
¡û
>W1711631729
MPRO01000010
Gammaproteobacteria
Solemya velum gill symbiont [MPRO]
73907
73832
-
Val
TAC
[ENA]
¡û
>W1711631872
MPRS01000001
Gammaproteobacteria
Solemya velum gill symbiont [MPRS]
73908
73833
-
Val
TAC
[ENA]
¡û
>W1711631924
MPRT01000008
Gammaproteobacteria
Solemya velum gill symbiont [MPRT]
73908
73833
-
Val
TAC
[ENA]
¡û
>W1711632063
MPRX01000003
Gammaproteobacteria
Solemya velum gill symbiont [MPRX]
19902
19977
+
Val
TAC
[ENA]
¡û
>W1711767914
MVBD01000002
Gammaproteobacteria
Marinicella sediminis F2 [MVBD]
509600
509525
-
Val
TAC
[ENA]
¡û
>C171026537
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1442468
1442543
+
Val
TAC
-
¡û
>C171026560
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1010661
1010586
-
Val
TAC
-
¡û
>C171026587
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2355620
2355695
+
Val
TAC
-
¡û
>C171026612
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
1926812
1926737
-
Val
TAC
-
¡û
>C171027036
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
2220992
2221067
+
Val
TAC
-
¡û
>C171027062
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1791378
1791303
-
Val
TAC
-
¡û
>C171027155
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2876033
2876108
+
Val
TAC
-
¡û
>C171027171
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2446445
2446370
-
Val
TAC
-
¡û
>C171027195
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
242220
242295
+
Val
TAC
-
¡û
>C171027224
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2998830
2998755
-
Val
TAC
-
¡û
>W131195183
ASSK01000154
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
5644
5569
-
Val
TAC
[ENA]
¡û
>W131195192
ASSK01000199
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
3834
3759
-
Val
TAC
[ENA]
¡û
>WENV180247983
OBEQ010075067
[OBEQ] groundwater metagenome; groundwater
167
92
-
Val
TAC
[ENA]
¢þ
>WENV180291601
OBIV01097222
[OBIV] soil metagenome; Clay
84
9
-
Val
TAC
[ENA]
¢þ
>WENV180346512
OBLN01136081
[OBLN] sediment metagenome; sediment
70
145
+
Val
TAC
[ENA]
¢þ
>WENV181324454
OFLE01014341
[OFLE] marine metagenome; sea ice
517
442
-
Val
TAC
[ENA]
¢þ
>WENV182553515
OJCR01008684
[OJCR] seawater metagenome; Sea water
2248
2323
+
Val
TAC
[ENA]
¢þ
>WENV170177087
CEOS01178366
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
466
541
+
Val
TAC
[ENA]
¢þ
>WENV170378436
CETV01021304
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
532
607
+
Val
TAC
[ENA]
¢þ
>WENV170572242
FLOH01000651
[FLOH] marine metagenome; water
65274
65199
-
Val
TAC
[ENA]
¢þ
>WENV170837508
MDSZ01150550
[MDSZ] marine metagenome; seawater
4713
4788
+
Val
TAC
[ENA]
¢þ
>WENV170925394
MDTG01083419
[MDTG] marine metagenome; seawater
3819
3894
+
Val
TAC
[ENA]
¢þ
>WENV170929690
MDTG01154163
[MDTG] marine metagenome; seawater
8320
8395
+
Val
TAC
[ENA]
¢þ
>WENV170934676
MDTG01242791
[MDTG] marine metagenome; seawater
1584
1659
+
Val
TAC
[ENA]
¢þ
>W1910728561
MGXO01000019
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_38_33 [MGXO]
3720
3645
-
Val
TAC
[ENA]
¡û
>W1910728691
MGXS01000005
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_15 [MGXS]
15250
15325
+
Val
TAC
[ENA]
¡û
>W1910729367
MGYM01000012
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_38_11 [MGYM]
42546
42471
-
Val
TAC
[ENA]
¡û
>W1910729670
MGYV01000042
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_38_14 [MGYV]
6403
6328
-
Val
TAC
[ENA]
¡û
>W1810090416
PGGB01000007
Gammaproteobacteria
Caedibacter taeniospiralis 51K [PGGB]
3035
2960
-
Val
TAC
[ENA]
¡û
>W1810760179
QPJY01000002
Gammaproteobacteria
Thioalbus denitrificans DSM 26407 [QPJY]
536996
536921
-
Val
TAC
[ENA]
¡û
>W1511336248
JRAA01000003
Gammaproteobacteria
Solemya velum gill symbiont gill symbiont WH [JRAA]
399714
399789
+
Val
TAC
[ENA]
¡û
>W1511346424
JRHD01000088
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
5513
5438
-
Val
TAC
[ENA]
¡û
>W1511346443
JRHD01000240
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
3688
3613
-
Val
TAC
[ENA]
¡û
>W1511346878
JRHP01000108
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
177
252
+
Val
TAC
[ENA]
¡û
>W1511346902
JRHP01000312
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
3852
3777
-
Val
TAC
[ENA]
¡û
>W1511657145
LELB01000035
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
5767
5692
-
Val
TAC
[ENA]
¡û
>W1511657151
LELB01000116
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
558
633
+
Val
TAC
[ENA]
¡û
>W1511657152
LELB01000116
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
870
945
+
Val
TAC
[ENA]
¡û
>W1710508470
FMWD01000007
Gammaproteobacteria
Thiohalomonas denitrificans [FMWD]
211847
211772
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK