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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301373 (64 seq.)
>W131144848
AQFS01000032
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
12292
12218
-
Glu
CTC
[ENA]
¡û
>W1711687589
MSCR01000019
Bacillota
Ligilactobacillus salivarius [MSCR]
83384
83310
-
Glu
CTC
[ENA]
¡û
>W1711943514
NBDY01000008
Bacillota
Ligilactobacillus salivarius [NBDY]
622015
621941
-
Glu
CTC
[ENA]
¡û
>W1711943808
NBEF01000017
Bacillota
Ligilactobacillus salivarius [NBEF]
440371
440297
-
Glu
CTC
[ENA]
¡û
>W1711943861
NBEG01000012
Bacillota
Ligilactobacillus salivarius [NBEG]
305243
305169
-
Glu
CTC
[ENA]
¡û
>W1711944091
NBEL01000009
Bacillota
Ligilactobacillus salivarius [NBEL]
68378
68304
-
Glu
CTC
[ENA]
¡û
>W1711944244
NBEO01000020
Bacillota
Ligilactobacillus salivarius [NBEO]
24167
24093
-
Glu
CTC
[ENA]
¡û
>W1711944513
NBEU01000008
Bacillota
Ligilactobacillus salivarius [NBEU]
382258
382184
-
Glu
CTC
[ENA]
¡û
>C171113761
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
739477
739551
+
Glu
CTC
-
¡û
>WENV180555504
OCJO01170138
[OCJO] human gut metagenome; human gut
196
270
+
Glu
CTC
[ENA]
¢þ
>WENV181240847
OFFE01011526
[OFFE] mouse gut metagenome; faeces
2041
2115
+
Glu
CTC
[ENA]
¢þ
>WENV181245046
OFFI01009492
[OFFI] mouse gut metagenome; faeces
736
662
-
Glu
CTC
[ENA]
¢þ
>WENV181245940
OFFJ01004580
[OFFJ] mouse gut metagenome; faeces
736
662
-
Glu
CTC
[ENA]
¢þ
>WENV181251450
OFFO01010275
[OFFO] mouse gut metagenome; faeces
119
45
-
Glu
CTC
[ENA]
¢þ
>WENV181257928
OFFU01012398
[OFFU] mouse gut metagenome; faeces
97
23
-
Glu
CTC
[ENA]
¢þ
>WENV181262640
OFFY01013530
[OFFY] mouse gut metagenome; faeces
734
660
-
Glu
CTC
[ENA]
¢þ
>WENV181329929
OFLY01000619
[OFLY] human gut metagenome; human gut
26030
26104
+
Glu
CTC
[ENA]
¢þ
>WENV181428600
OGCW01000001
[OGCW] metagenome; Human gut stool
274240
274166
-
Glu
CTC
[ENA]
¢þ
>WENV181429083
OGCX01000003
[OGCX] metagenome; Human gut stool
95319
95245
-
Glu
CTC
[ENA]
¢þ
>WENV181550765
OGIN01000077
[OGIN] metagenome; Human gut stool
105962
105888
-
Glu
CTC
[ENA]
¢þ
>WENV181581833
OGKB01000004
[OGKB] metagenome; Human gut stool
65429
65355
-
Glu
CTC
[ENA]
¢þ
>WENV181589684
OGKM01000018
[OGKM] metagenome; Human gut stool
158
84
-
Glu
CTC
[ENA]
¢þ
>WENV181993303
OHAS01000371
[OHAS] human gut metagenome; faeces
17292
17366
+
Glu
CTC
[ENA]
¢þ
>W141229053
BAMJ01000057
Bacillota
Latilactobacillus fuchuensis JCM 11249 [BAMJ]
3832
3758
-
Glu
CTC
[ENA]
¡û
>W141229188
BAMM01000003
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
28401
28475
+
Glu
CTC
[ENA]
¡û
>W141256139
CBVR010000008
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
67060
66986
-
Glu
CTC
[ENA]
¡û
>C181071517
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
752948
752874
-
Glu
CTC
-
¡û
>C181113692
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
82334
82260
-
Glu
CTC
-
¡û
>C181146825
CP027190
Bacillota
Lactobacillus sp. CBA3605 [CP027190]
652547
652621
+
Glu
CTC
-
¡û
>W09123098
ACGS01000004
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
26099
26173
+
Glu
CTC
[ENA]
¡û
>W1910177035
BJDL01000024
Bacillota
Lactiplantibacillus songbeiensis 398-2 [BJDL]
51759
51685
-
Glu
CTC
[ENA]
¡û
>W1910752033
MKDO01000028
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
647
573
-
Glu
CTC
[ENA]
¡û
>W1911493479
OBHL01000021
Bacillota
Latilactobacillus sakei J156 [OBHL]
1494
1420
-
Glu
CTC
[ENA]
¡û
>W1810838154
QSTB01000002
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
155231
155305
+
Glu
CTC
[ENA]
¡û
>C151030963
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
1096103
1096029
-
Glu
CTC
[Ensembl]
¡û
>W11168591
AFOI01000003
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
4028
4102
+
Glu
CTC
[ENA]
¡û
>W11184880
BACP01000004
Bacillota
Liquorilactobacillus mali KCTC 3596 [BACP]
15420
15494
+
Glu
CTC
[ENA]
¡û
>W121045150
AICL01000004
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
196552
196478
-
Glu
CTC
[ENA]
¡û
>W121086989
AKKT01000046
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AKKT]
21375
21301
-
Glu
CTC
[ENA]
¡û
>W1610030792
AYYH01000001
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AYYH]
141457
141531
+
Glu
CTC
[ENA]
¡û
>W1610030857
AYYI01000078
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
5636
5710
+
Glu
CTC
[ENA]
¡û
>W1610030976
AYYL01000010
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
56878
56952
+
Glu
CTC
[ENA]
¡û
>W1610031502
AYYW01000002
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
2707
2633
-
Glu
CTC
[ENA]
¡û
>W1610034175
AZDN01000023
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
521
447
-
Glu
CTC
[ENA]
¡û
>W1610035933
AZEX01000033
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
134
208
+
Glu
CTC
[ENA]
¡û
>W1610036440
AZFH01000057
Bacillota
Ligilactobacillus equi DSM 15833 = JCM 10991 [AZFH]
115
187
+
Glu
CTC
[ENA]
¡û
>W1610036591
AZFK01000038
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
2535
2609
+
Glu
CTC
[ENA]
¡û
>W1610036910
AZFQ01000052
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
125278
125204
-
Glu
CTC
[ENA]
¡û
>W1610037075
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
925743
925669
-
Glu
CTC
[ENA]
¡û
>W1610527771
JQAR01000004
Bacillota
Liquorilactobacillus mali [JQAR]
103509
103583
+
Glu
CTC
[ENA]
¡û
>W1610529993
JQCN01000017
Bacillota
Ligilactobacillus pobuzihii [JQCN]
851
925
+
Glu
CTC
[ENA]
¡û
>W1710027744
AYYH01000001
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AYYH]
141457
141531
+
Glu
CTC
[ENA]
¡û
>W1710027809
AYYI01000078
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
5636
5710
+
Glu
CTC
[ENA]
¡û
>W1710027928
AYYL01000010
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
56878
56952
+
Glu
CTC
[ENA]
¡û
>W1710028429
AYYW01000002
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
2707
2633
-
Glu
CTC
[ENA]
¡û
>W1710031302
AZDN01000023
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
521
447
-
Glu
CTC
[ENA]
¡û
>W1710032972
AZEX01000033
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
134
208
+
Glu
CTC
[ENA]
¡û
>W1710033479
AZFH01000057
Bacillota
Ligilactobacillus equi DSM 15833 = JCM 10991 [AZFH]
115
187
+
Glu
CTC
[ENA]
¡û
>W1710033630
AZFK01000038
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
2535
2609
+
Glu
CTC
[ENA]
¡û
>W1710033949
AZFQ01000052
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
125278
125204
-
Glu
CTC
[ENA]
¡û
>W1710034114
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
925743
925669
-
Glu
CTC
[ENA]
¡û
>W1710081641
BDFM01000341
Bacillota
Ligilactobacillus murinus [BDFM]
387
313
-
Glu
CTC
[ENA]
¡û
>W1710629402
JQAR01000004
Bacillota
Liquorilactobacillus mali [JQAR]
103509
103583
+
Glu
CTC
[ENA]
¡û
>W1710631583
JQCN01000017
Bacillota
Ligilactobacillus pobuzihii [JQCN]
851
925
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK