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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301500 (68 seq.)
>W1710860801
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
262962
263037
+
Gly
CCC
[ENA]
¡û
>W1710866318
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1962662
1962587
-
Gly
CCC
[ENA]
¡û
>W1710874884
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
430125
430050
-
Gly
CCC
[ENA]
¡û
>W1710878767
LMRF01000002
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
232823
232748
-
Gly
CCC
[ENA]
¡û
>W1710880667
LMSM01000008
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
52847
52922
+
Gly
CCC
[ENA]
¡û
>W1710880691
LMSN01000005
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
56317
56242
-
Gly
CCC
[ENA]
¡û
>W1710881081
LMSU01000002
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
279763
279688
-
Gly
CCC
[ENA]
¡û
>W1711126703
LUPF01000027
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
127414
127489
+
Gly
CCC
[ENA]
¡û
>W1711126783
LUPH01000216
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
4351
4426
+
Gly
CCC
[ENA]
¡û
>W1711127030
LUPN01000481
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
1093
1168
+
Gly
CCC
[ENA]
¡û
>W131155939
AQOZ01000023
Actinomycetota
Nocardioides sp. Iso805N [AQOZ]
159398
159323
-
Gly
CCC
[ENA]
¡û
>W131226735
AUEP01000006
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
8997
9072
+
Gly
CCC
[ENA]
¡û
>W131229402
AUGT01000026
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
79888
79961
+
Gly
CCC
[ENA]
¡û
>W131229448
AUGU01000016
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
176297
176222
-
Gly
CCC
[ENA]
¡û
>WENV180000015
CZKA01000015
[CZKA] metagenome; liquid mineral medium
8799
8874
+
Gly
CCC
[ENA]
¢þ
>WENV180000020
CZKA01000017
[CZKA] metagenome; liquid mineral medium
100835
100760
-
Gly
CCC
[ENA]
¢þ
>WENV180000067
CZKB01000005
[CZKB] metagenome; liquid mineral medium
412930
412855
-
Gly
CCC
[ENA]
¢þ
>WENV180039896
LLBY010206332
[LLBY] soil metagenome; soil from tomato rhizosphere
1
76
+
Gly
CCC
[ENA]
¢þ
>WENV180344641
OBLL01083990
[OBLL] soil metagenome; soil
185
113
-
Gly
CCC
[ENA]
¢þ
>WENV181163914
OEIQ01346947
[OEIQ] soil metagenome; soil
164
89
-
Gly
CCC
[ENA]
¢þ
>WENV170552150
CXWJ01041617
[CXWJ] wastewater metagenome; activated sludge
2164
2089
-
Gly
CCC
[ENA]
¢þ
>WENV170552417
CXWJ01064781
[CXWJ] wastewater metagenome; activated sludge
144
219
+
Gly
CCC
[ENA]
¢þ
>WENV170552420
CXWJ01065686
[CXWJ] wastewater metagenome; activated sludge
1022
947
-
Gly
CCC
[ENA]
¢þ
>WENV170727500
LULE01000241
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
59981
60056
+
Gly
CCC
[ENA]
¢þ
>WENV170728626
LULF01000005
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
137539
137614
+
Gly
CCC
[ENA]
¢þ
>WENV170730227
LULG01022986
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
223
148
-
Gly
CCC
[ENA]
¢þ
>WENV170730722
LULH01002255
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
1093
1168
+
Gly
CCC
[ENA]
¢þ
>WENV170731798
LULI01004187
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
5006
4931
-
Gly
CCC
[ENA]
¢þ
>WENV170733348
LULJ01013583
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
352
427
+
Gly
CCC
[ENA]
¢þ
>WENV170737022
LULN01001089
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
2010
2085
+
Gly
CCC
[ENA]
¢þ
>WENV170737520
LULO01000468
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
18342
18417
+
Gly
CCC
[ENA]
¢þ
>WENV170739398
LULQ01000769
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
4351
4426
+
Gly
CCC
[ENA]
¢þ
>WENV170741678
LULT01001082
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
1023
1098
+
Gly
CCC
[ENA]
¢þ
>WENV170742503
LULU01028850
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
679
604
-
Gly
CCC
[ENA]
¢þ
>WENV170743476
LULW01000155
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
33990
34065
+
Gly
CCC
[ENA]
¢þ
>WENV170746293
LULZ01022189
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
720
645
-
Gly
CCC
[ENA]
¢þ
>WENV170758962
LUMS01000556
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
1235
1310
+
Gly
CCC
[ENA]
¢þ
>WENV170761886
LUMW01000052
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
78049
78124
+
Gly
CCC
[ENA]
¢þ
>C191104198
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
3834793
3834867
+
Gly
CCC
-
¡û
>C191158856
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
2804466
2804391
-
Gly
CCC
-
¡û
>C191159471
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
1974244
1974169
-
Gly
CCC
-
¡û
>C191181598
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
4106261
4106334
+
Gly
CCC
-
¡û
>C191186707
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
2923580
2923505
-
Gly
CCC
-
¡û
>W141564333
JIAR01000012
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
158129
158054
-
Gly
CCC
[ENA]
¡û
>W141564497
JIAV01000009
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
337253
337178
-
Gly
CCC
[ENA]
¡û
>W09103292
AAJB01000134
Actinomycetota
Nocardioides sp. JS614 [AAJB]
7515
7590
+
Gly
CCC
[ENA]
¡û
>W141775198
JOJN01000003
Actinomycetota
Nocardioides aequoreus [JOJN]
313414
313339
-
Gly
CCC
[ENA]
¡û
>W1910141235
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
1559164
1559089
-
Gly
CCC
[ENA]
¡û
>W1810157316
PJBV01000035
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
935387
935462
+
Gly
CCC
[ENA]
¡û
>W1810462622
PZYX01000004
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
284613
284687
+
Gly
CCC
[ENA]
¡û
>W1810462678
PZYY01000008
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
125791
125716
-
Gly
CCC
[ENA]
¡û
>W1810487167
QAYJ01000001
Actinomycetota
Nocardioides sp. CF204 [QAYJ]
2767852
2767927
+
Gly
CCC
[ENA]
¡û
>W1810626172
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
1036913
1036838
-
Gly
CCC
[ENA]
¡û
>W1810626222
QHKY01000002
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
294895
294970
+
Gly
CCC
[ENA]
¡û
>W1610051416
BBGV01001724
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
125
200
+
Gly
CCC
[ENA]
¡û
>W1610723147
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
262962
263037
+
Gly
CCC
[ENA]
¡û
>W1610728664
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1962662
1962587
-
Gly
CCC
[ENA]
¡û
>W1610737230
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
430125
430050
-
Gly
CCC
[ENA]
¡û
>W1610741113
LMRF01000002
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
232823
232748
-
Gly
CCC
[ENA]
¡û
>W1610743013
LMSM01000008
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
52847
52922
+
Gly
CCC
[ENA]
¡û
>W1610743037
LMSN01000005
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
56317
56242
-
Gly
CCC
[ENA]
¡û
>W1610743427
LMSU01000002
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
279763
279688
-
Gly
CCC
[ENA]
¡û
>W1610937817
LUPF01000027
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
127414
127489
+
Gly
CCC
[ENA]
¡û
>W1610937897
LUPH01000216
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
4351
4426
+
Gly
CCC
[ENA]
¡û
>W1610938144
LUPN01000481
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
1093
1168
+
Gly
CCC
[ENA]
¡û
>W1710047794
BBGV01001724
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
125
200
+
Gly
CCC
[ENA]
¡û
>W1710512563
FMZM01000015
Actinomycetota
Nocardioides lianchengensis [FMZM]
75215
75140
-
Gly
CCC
[ENA]
¡û
>W1710556273
FOKC01000001
Actinomycetota
Nocardioides alpinus [FOKC]
935647
935722
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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