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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301636 (17 seq.)
>W1711081219
LSSA01000042
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
32849
32777
-
Ala
CGC
[ENA]
¡û
>w002291
AAAY02000081
Cyanobacteriota
Nostoc punctiforme [AAAY]
7889
7964
+
Ala
CGC
[ENA]
¡û
>C08006914
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7936802
7936874
+
Ala
CGC
[Ensembl]
¡û
>WENV170995842
MWWF01071730
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
515
443
-
Ala
CGC
[ENA]
¢þ
>WENV170997190
MWWG01044385
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
60
132
+
Ala
CGC
[ENA]
¢þ
>WENV171003074
NNBT01000061
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
18935
18863
-
Ala
CGC
[ENA]
¢þ
>WENV171003476
NNBU01000084
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
49621
49549
-
Ala
CGC
[ENA]
¢þ
>WENV171003713
NNBV01000491
[NNBV] plant metagenome; symbiotic tissue sample KVS11
5134
5206
+
Ala
CGC
[ENA]
¢þ
>C181105265
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2645613
2645539
-
Ala
CGC
-
¡û
>C181137757
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
3087494
3087422
-
Ala
CGC
-
¡û
>C181137816
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
6874387
6874315
-
Ala
CGC
-
¡û
>C191083046
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
4877674
4877748
+
Ala
CGC
-
¡û
>W1910020530
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4506663
4506589
-
Ala
CGC
[ENA]
¡û
>W1910646671
LWSY01000161
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
11938
11866
-
Ala
CGC
[ENA]
¡û
>W1911118655
NOLI01000032
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
26366
26294
-
Ala
CGC
[ENA]
¡û
>W1911118813
NOLK01000031
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
54610
54682
+
Ala
CGC
[ENA]
¡û
>W1911244310
NSHF01000664
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
470
398
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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