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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301639 (13 seq.)
>w002273
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
11146
11221
+
Pro
TGG
[ENA]
¡û
>C08006944
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3440861
3440789
-
Pro
TGG
[Ensembl]
¡û
>WENV171003145
NNBT01001888
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
452
524
+
Pro
TGG
[ENA]
¢þ
>WENV171003737
NNBV01000559
[NNBV] plant metagenome; symbiotic tissue sample KVS11
3858
3930
+
Pro
TGG
[ENA]
¢þ
>C181105257
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
4344113
4344041
-
Pro
TGG
-
¡û
>C181137777
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
861865
861793
-
Pro
TGG
-
¡û
>C191083031
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3881664
3881736
+
Pro
TGG
-
¡û
>W1910020514
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6397038
6397110
+
Pro
TGG
[ENA]
¡û
>W1911118684
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
12575
12503
-
Pro
TGG
[ENA]
¡û
>W1911118787
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
53500
53572
+
Pro
TGG
[ENA]
¡û
>W1911244303
NSHF01000587
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2920
2992
+
Pro
TGG
[ENA]
¡û
>C131004182
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3486081
3486009
-
Pro
TGG
[Ensembl]
¡û
>C131004861
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
2372852
2372924
+
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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