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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301640 (33 seq.)
>W1711335771
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496528
496603
+
Thr
TGT
[ENA]
¡û
>w002276
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
11629
11704
+
Thr
TGT
[ENA]
¡û
>C08006947
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3440378
3440306
-
Thr
TGT
[Ensembl]
¡û
>WENV171003086
NNBT01000427
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
70
142
+
Thr
TGT
[ENA]
¢þ
>WENV171003148
NNBT01001888
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
896
968
+
Thr
TGT
[ENA]
¢þ
>WENV171003456
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
30537
30465
-
Thr
TGT
[ENA]
¢þ
>WENV171003739
NNBV01000559
[NNBV] plant metagenome; symbiotic tissue sample KVS11
4262
4334
+
Thr
TGT
[ENA]
¢þ
>C181137779
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
861284
861212
-
Thr
TGT
-
¡û
>C181137838
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5265894
5265822
-
Thr
TGT
-
¡û
>C191001260
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4728048
4728123
+
Thr
TGT
-
¡û
>C191083033
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3881909
3881981
+
Thr
TGT
-
¡û
>W1910008391
BDGE01000023
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
340959
340884
-
Thr
TGT
[ENA]
¡û
>W1910596205
LAGX01000040
Cyanobacteriota
Nostoc linckia z1 [LAGX]
22409
22337
-
Thr
TGT
[ENA]
¡û
>W1910596296
LAGY01000054
Cyanobacteriota
Nostoc linckia z2 [LAGY]
22373
22301
-
Thr
TGT
[ENA]
¡û
>W1910596353
LAGZ01000007
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
248564
248492
-
Thr
TGT
[ENA]
¡û
>W1910596429
LAHA01000001
Cyanobacteriota
Nostoc linckia z4 [LAHA]
240223
240151
-
Thr
TGT
[ENA]
¡û
>W1910596534
LAHB01000038
Cyanobacteriota
Nostoc linckia z6 [LAHB]
22281
22209
-
Thr
TGT
[ENA]
¡û
>W1910596604
LAHC01000031
Cyanobacteriota
Nostoc linckia z7 [LAHC]
35658
35586
-
Thr
TGT
[ENA]
¡û
>W1910596687
LAHD01000032
Cyanobacteriota
Nostoc linckia z8 [LAHD]
14465
14393
-
Thr
TGT
[ENA]
¡û
>W1910596806
LAHE01000059
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28688
28760
+
Thr
TGT
[ENA]
¡û
>W1910596880
LAHF01000062
Cyanobacteriota
Nostoc linckia z13 [LAHF]
14427
14355
-
Thr
TGT
[ENA]
¡û
>W1910596947
LAHG01000042
Cyanobacteriota
Nostoc linckia z14 [LAHG]
22382
22310
-
Thr
TGT
[ENA]
¡û
>W1910597043
LAHH01000043
Cyanobacteriota
Nostoc linckia z15 [LAHH]
2154
2082
-
Thr
TGT
[ENA]
¡û
>W1910597117
LAHI01000046
Cyanobacteriota
Nostoc linckia z16 [LAHI]
16758
16686
-
Thr
TGT
[ENA]
¡û
>W1910597214
LAHJ01000046
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
14541
14469
-
Thr
TGT
[ENA]
¡û
>W1910646669
LWSY01000156
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
532
460
-
Thr
TGT
[ENA]
¡û
>W1910792666
MRBZ01000030
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
21678
21750
+
Thr
TGT
[ENA]
¡û
>W1911118686
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
12001
11929
-
Thr
TGT
[ENA]
¡û
>W1911118723
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
467595
467523
-
Thr
TGT
[ENA]
¡û
>W1911118790
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
53971
54045
+
Thr
TGT
[ENA]
¡û
>C161038894
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3705135
3705210
+
Thr
TGT
[Ensembl]
¡û
>C131004185
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3485608
3485533
-
Thr
TGT
[Ensembl]
¡û
>W1611066478
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496528
496603
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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