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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301658 (20 seq.)
>W1710889734
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
99182
99258
+
Arg
CCT
[ENA]
¡û
>C016028
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1982169
1982093
-
Arg
CCT
[Ensembl]
¡û
>WENV180285095
OBID01221326
[OBID] metagenome; sludge
253
177
-
Arg
CCT
[ENA]
¢þ
>WENV170564860
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
99182
99258
+
Arg
CCT
[ENA]
¢þ
>PL191000057
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1982169
1982093
-
Arg
CCT
[Ensembl]
¡û
>C181099776
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
1835149
1835225
+
Arg
CCT
-
¡û
>C181203391
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
835129
835205
+
Arg
CCT
-
¡û
>C191134394
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
723459
723383
-
Arg
CCT
-
¡û
>W09103068
AAIT01000012
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
167710
167786
+
Arg
CCT
[ENA]
¡û
>W1911810948
QZCG01000002
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
312906
312982
+
Arg
CCT
[ENA]
¡û
>W1810585341
QFCQ01000172
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
3217
3293
+
Arg
CCT
[ENA]
¡û
>C11117050
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2664114
2664038
-
Arg
CCT
[Ensembl]
¡û
>W121060011
AJFB01001345
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
266
342
+
Arg
CCT
[ENA]
¡û
>W1610049838
BBFH01000366
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1005
1081
+
Arg
CCT
[ENA]
¡û
>W1610750112
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
99182
99258
+
Arg
CCT
[ENA]
¡û
>W1710046237
BBFH01000366
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1005
1081
+
Arg
CCT
[ENA]
¡û
>W1710518482
FNEA01000052
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
17077
17153
+
Arg
CCT
[ENA]
¡û
>W1710563588
FOPU01000020
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
5952
5876
-
Arg
CCT
[ENA]
¡û
>W1710574703
FOYK01000052
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
2450
2374
-
Arg
CCT
[ENA]
¡û
>W1710581755
FPKI01000005
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
38899
38823
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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