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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301672 (57 seq.)
>W1710947288
LOSJ01000002
Gammaproteobacteria
Vibrio mimicus [LOSJ]
1006779
1006704
-
Thr
GGT
[ENA]
¡û
>W131180095
ARMW01000023
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
71758
71683
-
Thr
GGT
[ENA]
¡û
>W1711829900
MXRX01000041
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Thompson [MXRX]
33510
33435
-
Thr
GGT
[ENA]
¡û
>W1711876355
MYRV01000680
Gammaproteobacteria
Salmonella enterica [MYRV]
78
153
+
Thr
GGT
[ENA]
¡û
>W131176636
ARKF01000007
Gammaproteobacteria
Succinimonas amylolytica DSM 2873 [ARKF]
41854
41779
-
Thr
GGT
[ENA]
¡û
>C171048476
CP016383
Gammaproteobacteria
Vibrio mimicus SCCF01 [CP016383, CP016384]
476085
476160
+
Thr
GGT
-
¡û
>W131093709
AOMO01000042
Gammaproteobacteria
Vibrio mimicus CAIM 602 [AOMO]
19047
18972
-
Thr
GGT
[ENA]
¡û
>WENV180405075
OBSA01161661
[OBSA] human gut metagenome; ENVO:feces
162
87
-
Thr
GGT
[ENA]
¢þ
>WENV180561767
OCKZ01005314
[OCKZ] human gut metagenome; human gut
1142
1067
-
Thr
GGT
[ENA]
¢þ
>WENV180561768
OCKZ01005314
[OCKZ] human gut metagenome; human gut
1033
958
-
Thr
GGT
[ENA]
¢þ
>WENV180561769
OCKZ01005314
[OCKZ] human gut metagenome; human gut
924
849
-
Thr
GGT
[ENA]
¢þ
>WENV180565301
OCLF01133533
[OCLF] human gut metagenome; human gut
162
87
-
Thr
GGT
[ENA]
¢þ
>WENV181416319
OGCL01072751
[OGCL] hot springs metagenome; Hot spring water
143
68
-
Thr
GGT
[ENA]
¢þ
>W141147131
AWWL01000141
Gammaproteobacteria
Vibrio mimicus CAIM 1883 [AWWL]
50682
50607
-
Thr
GGT
[ENA]
¡û
>W141147425
AWWY01000141
Gammaproteobacteria
Vibrio mimicus CAIM 1882 [AWWY]
2646
2571
-
Thr
GGT
[ENA]
¡û
>WENV182288761
OHVU01000010
[OHVU] human gut metagenome; feces
65205
65130
-
Thr
GGT
[ENA]
¢þ
>WENV182469124
OIPC01003189
[OIPC] human gut metagenome; human gut
181
106
-
Thr
GGT
[ENA]
¢þ
>WENV182831756
OKEH01000221
[OKEH] human gut metagenome; human gut
110
185
+
Thr
GGT
[ENA]
¢þ
>WENV183645266
OQVQ01002677
[OQVQ] human gut metagenome; human gut
89
164
+
Thr
GGT
[ENA]
¢þ
>WENV183649165
OQVS01125782
[OQVS] human gut metagenome; human gut
467
392
-
Thr
GGT
[ENA]
¢þ
>WENV183649166
OQVS01125782
[OQVS] human gut metagenome; human gut
358
283
-
Thr
GGT
[ENA]
¢þ
>WENV183654516
OQWA01055967
[OQWA] human gut metagenome; human gut
60
135
+
Thr
GGT
[ENA]
¢þ
>WENV183654517
OQWA01055967
[OQWA] human gut metagenome; human gut
169
244
+
Thr
GGT
[ENA]
¢þ
>WENV170016092
AZIJ01012401
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
415
340
-
Thr
GGT
[ENA]
¢þ
>C181012386
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
262797
262872
+
Thr
GGT
-
¡û
>C181012446
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
4060355
4060280
-
Thr
GGT
-
¡û
>W141569170
JIDP01000004
Gammaproteobacteria
Vibrio mimicus cholerae [JIDP]
331334
331259
-
Thr
GGT
[ENA]
¡û
>W1910617951
LJAM02000130
Gammaproteobacteria
Candidatus Erwinia dacicola dacicola Oroville [LJAM]
1346
1271
-
Thr
GGT
[ENA]
¡û
>W1910852621
NBIM01000003
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
255322
255247
-
Thr
GGT
[ENA]
¡û
>W1910852648
NBIM01000011
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
51501
51576
+
Thr
GGT
[ENA]
¡û
>W1911075401
NMUO01000049
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
27436
27511
+
Thr
GGT
[ENA]
¡û
>W1911075420
NMUO01000085
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
301
376
+
Thr
GGT
[ENA]
¡û
>W1911174198
NQJF01000019
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
47827
47902
+
Thr
GGT
[ENA]
¡û
>W1810390223
PXYH01000012
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
71402
71327
-
Thr
GGT
[ENA]
¡û
>W1810390246
PXYH01000025
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
60809
60734
-
Thr
GGT
[ENA]
¡û
>W1810471830
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
314
389
+
Thr
GGT
[ENA]
¡û
>W1810471880
QAGM01000012
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
69825
69750
-
Thr
GGT
[ENA]
¡û
>ENV09002558
ADGC01006227
Wallaby gut metagenome MeugComb_C1
592
667
+
Thr
GGT
[ENA]
¡û
>W10106730
ACYU01000068
Gammaproteobacteria
Vibrio mimicus VM603 [ACYU]
51
126
+
Thr
GGT
[ENA]
¡û
>W10106818
ACYV01000017
Gammaproteobacteria
Vibrio mimicus VM573 [ACYV]
55021
54946
-
Thr
GGT
[ENA]
¡û
>W10108388
ADAF01000001
Gammaproteobacteria
Vibrio mimicus MB-451 [ADAF]
260709
260784
+
Thr
GGT
[ENA]
¡û
>W10108631
ADAJ01000008
Gammaproteobacteria
Vibrio mimicus VM223 [ADAJ]
1950621
1950546
-
Thr
GGT
[ENA]
¡û
>C11108122
CP002797
Gammaproteobacteria
Escherichia coli [CP002797]
3428433
3428358
-
Thr
GGT
[Ensembl]
¡û
>W11109019
ACYU01000068
Gammaproteobacteria
Vibrio mimicus VM603 [ACYU]
51
126
+
Thr
GGT
[ENA]
¡û
>W11109107
ACYV01000017
Gammaproteobacteria
Vibrio mimicus VM573 [ACYV]
55021
54946
-
Thr
GGT
[ENA]
¡û
>W1510671558
CWOS01000019
Gammaproteobacteria
Vibrio cholerae A61 [CWOS]
73166
73091
-
Thr
GGT
[ENA]
¡û
>W1510673141
CWQC01000004
Gammaproteobacteria
Vibrio cholerae A279 [CWQC]
89
164
+
Thr
GGT
[ENA]
¡û
>W1510673456
CWQJ01000033
Gammaproteobacteria
Vibrio cholerae A325 [CWQJ]
31308
31233
-
Thr
GGT
[ENA]
¡û
>W11110775
ADAF01000001
Gammaproteobacteria
Vibrio mimicus MB-451 [ADAF]
260709
260784
+
Thr
GGT
[ENA]
¡û
>W11111018
ADAJ01000008
Gammaproteobacteria
Vibrio mimicus VM223 [ADAJ]
1950621
1950546
-
Thr
GGT
[ENA]
¡û
>W11121895
ADOO01000002
Gammaproteobacteria
Vibrio mimicus SX-4 [ADOO]
50065
49990
-
Thr
GGT
[ENA]
¡û
>C11123402
CP002555
Gammaproteobacteria
Vibrio cholerae LMA3984-4 [CP002555, CP002556]
2506833
2506758
-
Thr
GGT
[Ensembl]
¡û
>W1511546276
JZKY01000023
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL14 [JZKY]
348
273
-
Thr
GGT
[ENA]
¡û
>C121007304
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
493612
493687
+
Thr
GGT
[Ensembl]
¡û
>C121007314
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
783620
783695
+
Thr
GGT
[Ensembl]
¡û
>C161065646
CP014043
Gammaproteobacteria
Vibrio mimicus FDAARGOS_112 [CP014042, CP014043]
282295
282220
-
Thr
GGT
-
¡û
>W1610803290
LOSJ01000002
Gammaproteobacteria
Vibrio mimicus [LOSJ]
1006779
1006704
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK