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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301770 (79 seq.)
>WENV180287908
OBIL01012638
[OBIL] metagenome; hydrothermal vent
63
138
+
Lys
TTT
[ENA]
¢þ
>WENV183707068
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4518
4593
+
Lys
TTT
[ENA]
¢þ
>WENV183707072
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4884
4959
+
Lys
TTT
[ENA]
¢þ
>WENV183709752
PDWI01033201
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4535
4610
+
Lys
TTT
[ENA]
¢þ
>WENV183710156
PDWI01040711
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3913
3988
+
Lys
TTT
[ENA]
¢þ
>WENV183710814
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
204
279
+
Lys
TTT
[ENA]
¢þ
>WENV183714100
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
195
270
+
Lys
TTT
[ENA]
¢þ
>WENV183714544
PDWI01189752
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1285
1360
+
Lys
TTT
[ENA]
¢þ
>WENV183721732
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
847
922
+
Lys
TTT
[ENA]
¢þ
>WENV183721737
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1343
1418
+
Lys
TTT
[ENA]
¢þ
>ENV08001653
ABNL01003668
coral metagenome; viral fraction from whole Porites compressa tissue extracts taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours
43
118
+
Lys
TTT
[ENA]
¡û
>WENV170012860
ASRP01003157
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1139
1214
+
Lys
TTT
[ENA]
¢þ
>WENV170012957
ASRQ01000232
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
11359
11434
+
Lys
TTT
[ENA]
¢þ
>WENV170014450
AYRG01000277
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV170646444
JQGR01004907
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
95
20
-
Lys
TTT
[ENA]
¢þ
>C181196955
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598965
598890
-
Lys
TTT
-
¡û
>C181196959
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598609
598534
-
Lys
TTT
-
¡û
>C181197015
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
591368
591293
-
Lys
TTT
-
¡û
>C181197019
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
591006
590931
-
Lys
TTT
-
¡û
>C181197023
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
590657
590582
-
Lys
TTT
-
¡û
>C191084511
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
553337
553262
-
Lys
TTT
-
¡û
>C191084515
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552993
552918
-
Lys
TTT
-
¡û
>C191084519
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552649
552574
-
Lys
TTT
-
¡û
>C191084680
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653427
653352
-
Lys
TTT
-
¡û
>C191084684
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653024
652949
-
Lys
TTT
-
¡û
>C191084688
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652621
652546
-
Lys
TTT
-
¡û
>C191147215
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
540075
540000
-
Lys
TTT
-
¡û
>C191147219
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
539716
539641
-
Lys
TTT
-
¡û
>C191186425
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
716963
716888
-
Lys
TTT
-
¡û
>C191186429
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
716617
716542
-
Lys
TTT
-
¡û
>W1911413061
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
47340
47265
-
Lys
TTT
[ENA]
¡û
>W1911413065
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
46936
46861
-
Lys
TTT
[ENA]
¡û
>W1911413104
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16844
16769
-
Lys
TTT
[ENA]
¡û
>W1911413108
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16440
16365
-
Lys
TTT
[ENA]
¡û
>W1911419355
NXAO01000009
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
28835
28760
-
Lys
TTT
[ENA]
¡û
>W1911419381
NXAO01000026
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
62107
62182
+
Lys
TTT
[ENA]
¡û
>W1911419399
NXAO01000099
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
479
404
-
Lys
TTT
[ENA]
¡û
>W1911419403
NXAO01000099
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
76
1
-
Lys
TTT
[ENA]
¡û
>W1911424166
NXFY01000005
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
150558
150633
+
Lys
TTT
[ENA]
¡û
>W1911424206
NXFY01000113
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
175
250
+
Lys
TTT
[ENA]
¡û
>W1911426247
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16535
16460
-
Lys
TTT
[ENA]
¡û
>W1911426251
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16180
16105
-
Lys
TTT
[ENA]
¡û
>W1911426265
NXIF01000017
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
12682
12757
+
Lys
TTT
[ENA]
¡û
>W1911576161
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
74109
74034
-
Lys
TTT
[ENA]
¡û
>W1911576165
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
73745
73670
-
Lys
TTT
[ENA]
¡û
>W1911576291
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
641
566
-
Lys
TTT
[ENA]
¡û
>W1911576295
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
297
222
-
Lys
TTT
[ENA]
¡û
>W1911576334
PDJX01000236
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
175
250
+
Lys
TTT
[ENA]
¡û
>W1911576351
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
30296
30221
-
Lys
TTT
[ENA]
¡û
>W1911576355
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29893
29818
-
Lys
TTT
[ENA]
¡û
>W1911576359
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29490
29415
-
Lys
TTT
[ENA]
¡û
>W1911576494
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
31069
30994
-
Lys
TTT
[ENA]
¡û
>W1911576498
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30715
30640
-
Lys
TTT
[ENA]
¡û
>W1911576562
PDKD01000194
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
199
124
-
Lys
TTT
[ENA]
¡û
>W1911576595
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73685
73610
-
Lys
TTT
[ENA]
¡û
>W1911576599
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73323
73248
-
Lys
TTT
[ENA]
¡û
>W1911576631
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236372
236297
-
Lys
TTT
[ENA]
¡û
>W1911576665
PDKG01000005
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
291
216
-
Lys
TTT
[ENA]
¡û
>W1911576793
PDKJ01000011
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
14211
14286
+
Lys
TTT
[ENA]
¡û
>W1911576798
PDKJ01000011
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
14669
14744
+
Lys
TTT
[ENA]
¡û
>W1911576838
PDKK01000013
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
14802
14877
+
Lys
TTT
[ENA]
¡û
>W1911576843
PDKK01000013
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
15261
15336
+
Lys
TTT
[ENA]
¡û
>W1911576886
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
72271
72196
-
Lys
TTT
[ENA]
¡û
>W1911576890
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
71915
71840
-
Lys
TTT
[ENA]
¡û
>W1911576927
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
72304
72229
-
Lys
TTT
[ENA]
¡û
>W1911576931
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
71948
71873
-
Lys
TTT
[ENA]
¡û
>W1911576942
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69920
69845
-
Lys
TTT
[ENA]
¡û
>W1911576946
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69513
69438
-
Lys
TTT
[ENA]
¡û
>W1911577017
PDKO01000016
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
15655
15580
-
Lys
TTT
[ENA]
¡û
>W1911577021
PDKO01000016
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
15309
15234
-
Lys
TTT
[ENA]
¡û
>SRA1001669
SRR001078.23870
Coral Stressors, viral fraction from whole Porites compressa tissue extracts; an aquarium control experiment (SRP000166)
43
118
+
Lys
TTT
[SRA]
>W1810295888
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
40233
40158
-
Lys
TTT
[ENA]
¡û
>W1810295892
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39829
39754
-
Lys
TTT
[ENA]
¡û
>W1810295896
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39425
39350
-
Lys
TTT
[ENA]
¡û
>W1511517364
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
885248
885323
+
Lys
TTT
[ENA]
¡û
>W1511517368
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
885594
885669
+
Lys
TTT
[ENA]
¡û
>W1710602820
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57818
57743
-
Lys
TTT
[ENA]
¡û
>W1710602824
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57417
57342
-
Lys
TTT
[ENA]
¡û
>W1710602828
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57016
56941
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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