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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301793 (55 seq.)
>A171001193
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1116892
1116819
-
Arg
CCT
-
¡û
>A171001416
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
1061565
1061492
-
Arg
CCT
-
¡û
>A171006227
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1075866
1075794
-
Arg
CCT
-
¡û
>A171006228
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1075616
1075544
-
Arg
CCT
-
¡û
>A171006902
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
132519
132447
-
Arg
CCT
-
¡û
>WENV180318186
OBKM01000045
[OBKM] metagenome; water
28720
28792
+
Arg
CCT
[ENA]
¢þ
>WENV180318479
OBKM01001232
[OBKM] metagenome; water
81
153
+
Arg
CCT
[ENA]
¢þ
>WENV180318667
OBKM01004008
[OBKM] metagenome; water
3966
3894
-
Arg
CCT
[ENA]
¢þ
>WENV180318876
OBKM01024109
[OBKM] metagenome; water
625
553
-
Arg
CCT
[ENA]
¢þ
>WENV170661120
JXWU01108882
[JXWU] soil metagenome; rice field; organic control Plot
378
450
+
Arg
CCT
[ENA]
¢þ
>WENV170681775
LFFM01002637
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10567
10495
-
Arg
CCT
[ENA]
¢þ
>W1910186257
CCDK010000005
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
627314
627242
-
Arg
CCT
[ENA]
¡û
>W1910193539
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
973255
973327
+
Arg
CCT
[ENA]
¡û
>W1910226715
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
325060
325132
+
Arg
CCT
[ENA]
¡û
>W1910227099
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
604073
604145
+
Arg
CCT
[ENA]
¡û
>W1910229607
FOAD01000001
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
778579
778507
-
Arg
CCT
[ENA]
¡û
>W1910229735
FOCX01000049
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
8763
8835
+
Arg
CCT
[ENA]
¡û
>W1910230347
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
1092205
1092133
-
Arg
CCT
[ENA]
¡û
>W1910230489
FOTC01000002
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
608062
608135
+
Arg
CCT
[ENA]
¡û
>W1910573495
JPES01000120
Euryarchaeota
Haloferax sp. ATB1 [JPES]
6237
6309
+
Arg
CCT
[ENA]
¡û
>W1911629754
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
534625
534698
+
Arg
CCT
[ENA]
¡û
>W1911629813
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1118665
1118592
-
Arg
CCT
[ENA]
¡û
>W1911629874
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
543386
543458
+
Arg
CCT
[ENA]
¡û
>W1911629911
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
831045
830973
-
Arg
CCT
[ENA]
¡û
>W1911629950
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
300245
300318
+
Arg
CCT
[ENA]
¡û
>W1911630011
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
831045
830973
-
Arg
CCT
[ENA]
¡û
>W1911630063
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1199198
1199126
-
Arg
CCT
[ENA]
¡û
>W1911655677
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
531464
531537
+
Arg
CCT
[ENA]
¡û
>W1911655721
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
563077
563149
+
Arg
CCT
[ENA]
¡û
>W1911696803
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
1286097
1286169
+
Arg
CCT
[ENA]
¡û
>W1911709492
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1118665
1118592
-
Arg
CCT
[ENA]
¡û
>W1911709541
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1118665
1118592
-
Arg
CCT
[ENA]
¡û
>W1911717808
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
648280
648352
+
Arg
CCT
[ENA]
¡û
>SRA1013801
SRR023631.32603
High saltern (Pond 5) microbes attempt 1 (SRP001107)
51
123
+
Arg
CCT
[SRA]
>W1610005882
ALJD01000003
Euryarchaeota
Halogranum salarium B-1 [ALJD]
186769
186697
-
Arg
CCT
[ENA]
¡û
>W1610011536
ANPG01000703
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
2
75
+
Arg
CCT
[ENA]
¡û
>W1610011815
AOHU01000091
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
208669
208742
+
Arg
CCT
[ENA]
¡û
>W1610013456
AOLD01000018
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
209981
210054
+
Arg
CCT
[ENA]
¡û
>W1610013526
AOLE01000019
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
352432
352505
+
Arg
CCT
[ENA]
¡û
>W1610013554
AOLF01000013
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
259511
259438
-
Arg
CCT
[ENA]
¡û
>W1610013622
AOLG01000012
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
17530
17458
-
Arg
CCT
[ENA]
¡û
>W1610013675
AOLH01000017
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
91737
91809
+
Arg
CCT
[ENA]
¡û
>W1610013704
AOLI01000008
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
8677
8605
-
Arg
CCT
[ENA]
¡û
>W1610013797
AOLJ01000024
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
242511
242583
+
Arg
CCT
[ENA]
¡û
>W1610013824
AOLK01000015
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
279898
279826
-
Arg
CCT
[ENA]
¡û
>W1610013858
AOLL01000009
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
219198
219270
+
Arg
CCT
[ENA]
¡û
>W1610013915
AOLM01000003
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
140019
139947
-
Arg
CCT
[ENA]
¡û
>W1610013993
AOLN01000018
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
201098
201170
+
Arg
CCT
[ENA]
¡û
>W1610014010
AOLO01000006
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
105612
105685
+
Arg
CCT
[ENA]
¡û
>W1610014098
AOLP01000019
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
58737
58809
+
Arg
CCT
[ENA]
¡û
>W1610014651
AOME01000079
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
86934
86861
-
Arg
CCT
[ENA]
¡û
>W1610040529
BAFM01000001
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
95624
95697
+
Arg
CCT
[ENA]
¡û
>W1610784321
LOEP01000056
Euryarchaeota
Haloferax sp. Q22 [LOEP]
73634
73706
+
Arg
CCT
[ENA]
¡û
>W1610799864
LOPV01000634
Euryarchaeota
Haloferax profundi SB29 [LOPV]
268
196
-
Arg
CCT
[ENA]
¡û
>W1610799885
LOPW01000028
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
130639
130566
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK