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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301896 (87 seq.)
>WENV180223323
OBBG01002423
[OBBG] human gut metagenome; human gut
1550
1475
-
Val
TAC
[ENA]
¢þ
>WENV180237085
OBCW01075687
[OBCW] human gut metagenome; human gut
185
110
-
Val
TAC
[ENA]
¢þ
>WENV180315093
OBKH01016746
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
149
224
+
Val
TAC
[ENA]
¢þ
>WENV180543060
OCHT01053243
[OCHT] human gut metagenome; human gut
390
315
-
Val
TAC
[ENA]
¢þ
>WENV180543718
OCHT01265246
[OCHT] human gut metagenome; human gut
78
3
-
Val
TAC
[ENA]
¢þ
>WENV180568310
OCLM01084756
[OCLM] human gut metagenome; human gut
9
84
+
Val
TAC
[ENA]
¢þ
>WENV180630300
OCQT01027939
[OCQT] human gut metagenome; human gut
876
801
-
Val
TAC
[ENA]
¢þ
>WENV180800011
ODJC01052421
[ODJC] human metagenome; G_DNA_Stool
29
104
+
Val
TAC
[ENA]
¢þ
>WENV180916155
ODTB01125399
[ODTB] human metagenome; G_DNA_Stool
86
11
-
Val
TAC
[ENA]
¢þ
>WENV180994229
ODVQ01046407
[ODVQ] human metagenome; G_DNA_Stool
519
444
-
Val
TAC
[ENA]
¢þ
>WENV180997893
ODVS01174716
[ODVS] human metagenome; G_DNA_Stool
40
115
+
Val
TAC
[ENA]
¢þ
>WENV181128399
OEFW01110058
[OEFW] human metagenome; G_DNA_Stool
36
111
+
Val
TAC
[ENA]
¢þ
>WENV181350370
OFMO01009228
[OFMO] human gut metagenome; human gut
1386
1461
+
Val
TAC
[ENA]
¢þ
>WENV181510199
OGGQ01044550
[OGGQ] metagenome; Human gut stool
44
119
+
Val
TAC
[ENA]
¢þ
>W08011387
ABVG01000010
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
1015
943
-
Val
TAC
[ENA]
¡û
>W08011394
ABVG01000033
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
7677
7605
-
Val
TAC
[ENA]
¡û
>W08011408
ABVG01000128
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
1399
1474
+
Val
TAC
[ENA]
¡û
>W141233362
BAVR01000006
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
26047
26122
+
Val
TAC
[ENA]
¡û
>W141233371
BAVR01000022
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
17882
17807
-
Val
TAC
[ENA]
¡û
>W141233391
BAVR01000043
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
18378
18303
-
Val
TAC
[ENA]
¡û
>W141251483
CBQO010000064
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
19668
19593
-
Val
TAC
[ENA]
¡û
>W141251491
CBQO010000096
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
46276
46201
-
Val
TAC
[ENA]
¡û
>W141251502
CBQO010000109
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
152
227
+
Val
TAC
[ENA]
¡û
>WENV183168403
OLOZ01016437
[OLOZ] human gut metagenome; faeces
1583
1508
-
Val
TAC
[ENA]
¢þ
>WENV183175569
OLPF01000430
[OLPF] human gut metagenome; faeces
24357
24282
-
Val
TAC
[ENA]
¢þ
>WENV183279618
OLSB01000627
[OLSB] human gut metagenome; faeces
15113
15188
+
Val
TAC
[ENA]
¢þ
>WENV183759337
PPYE01207515
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
15559
15634
+
Val
TAC
[ENA]
¢þ
>WENV170002676
AGTN01098939
[AGTN] bioreactor metagenome; poplar biomass
439
364
-
Val
TAC
[ENA]
¢þ
>WENV170003841
AGTN01470285
[AGTN] bioreactor metagenome; poplar biomass
220
295
+
Val
TAC
[ENA]
¢þ
>WENV170003901
AGTN01496339
[AGTN] bioreactor metagenome; poplar biomass
90
165
+
Val
TAC
[ENA]
¢þ
>ENV08002447
ABPU01006479
microbial mat metagenome; Guerrero Negro Hypersaline Mat 06; altitude 310m AMSL; sample depth 1m below water level, 5-6mm depth into the mat
452
527
+
Val
TAC
[ENA]
¡û
>WENV170671897
LAHU01212354
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
417
492
+
Val
TAC
[ENA]
¢þ
>WENV170717277
LSQX01029951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1117
1192
+
Val
TAC
[ENA]
¢þ
>WENV170722689
LSQX01239221
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2266
2191
-
Val
TAC
[ENA]
¢þ
>WENV170724691
LSQX01314878
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
228
153
-
Val
TAC
[ENA]
¢þ
>W09135637
ACVX01000001
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
154103
154028
-
Val
TAC
[ENA]
¡û
>W09135656
ACVX01000009
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
44243
44318
+
Val
TAC
[ENA]
¡û
>W09135671
ACVX01000033
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
21573
21648
+
Val
TAC
[ENA]
¡û
>C181114021
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
81943
82018
+
Val
TAC
-
¡û
>C181114037
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
3196760
3196685
-
Val
TAC
-
¡û
>W141816748
JQKC01000021
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
128502
128577
+
Val
TAC
[ENA]
¡û
>W141816760
JQKC01000029
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
20936
20861
-
Val
TAC
[ENA]
¡û
>W1910496850
FXVB02000087
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
541
616
+
Val
TAC
[ENA]
¡û
>W1911159510
NPML01000012
Bacillota
Petroclostridium xylanilyticum SK-Y3 [NPML]
134611
134536
-
Val
TAC
[ENA]
¡û
>W1911159519
NPML01000013
Bacillota
Petroclostridium xylanilyticum SK-Y3 [NPML]
344169
344094
-
Val
TAC
[ENA]
¡û
>W1911159529
NPML01000019
Bacillota
Petroclostridium xylanilyticum SK-Y3 [NPML]
516174
516099
-
Val
TAC
[ENA]
¡û
>W1911496618
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
676639
676714
+
Val
TAC
[ENA]
¡û
>W1911496622
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1042511
1042586
+
Val
TAC
[ENA]
¡û
>W1911496669
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
158433
158358
-
Val
TAC
[ENA]
¡û
>W1810367588
PVXQ01000009
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
32903
32828
-
Val
TAC
[ENA]
¡û
>W1810367603
PVXQ01000030
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
41468
41543
+
Val
TAC
[ENA]
¡û
>W1810367607
PVXQ01000030
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
41883
41958
+
Val
TAC
[ENA]
¡û
>W1810367611
PVXQ01000030
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
42297
42372
+
Val
TAC
[ENA]
¡û
>W1810759859
QPJT01000001
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
257074
256999
-
Val
TAC
[ENA]
¡û
>W1810759871
QPJT01000005
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
95627
95702
+
Val
TAC
[ENA]
¡û
>W1810759899
QPJT01000022
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
13547
13622
+
Val
TAC
[ENA]
¡û
>W10126177
AEDB01000047
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
17867
17942
+
Val
TAC
[ENA]
¡û
>W10126186
AEDB01000062
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
5681
5756
+
Val
TAC
[ENA]
¡û
>W10126188
AEDB01000068
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
14025
13950
-
Val
TAC
[ENA]
¡û
>W11133438
AEDB01000047
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
17867
17942
+
Val
TAC
[ENA]
¡û
>W11133447
AEDB01000062
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
5681
5756
+
Val
TAC
[ENA]
¡û
>W11133449
AEDB01000068
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
14025
13950
-
Val
TAC
[ENA]
¡û
>C161076040
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
2816611
2816536
-
Val
TAC
[Ensembl]
¡û
>C161076088
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
2907561
2907486
-
Val
TAC
[Ensembl]
¡û
>C161097521
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
294031
294106
+
Val
TAC
-
¡û
>C161097543
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
3353404
3353329
-
Val
TAC
-
¡û
>C161097547
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2987532
2987457
-
Val
TAC
-
¡û
>W121061294
AJGS01000038
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
154573
154498
-
Val
TAC
[ENA]
¡û
>W121061317
AJGS01000065
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
142090
142015
-
Val
TAC
[ENA]
¡û
>W121061333
AJGS01000093
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
21188
21263
+
Val
TAC
[ENA]
¡û
>W121061365
AJGT01000041
Bacillota
Acetivibrio thermocellus YS [AJGT]
19929
19854
-
Val
TAC
[ENA]
¡û
>W121061374
AJGT01000047
Bacillota
Acetivibrio thermocellus YS [AJGT]
202837
202762
-
Val
TAC
[ENA]
¡û
>W121061383
AJGT01000050
Bacillota
Acetivibrio thermocellus YS [AJGT]
43771
43846
+
Val
TAC
[ENA]
¡û
>W1610043696
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
202997
203072
+
Val
TAC
[ENA]
¡û
>W1610605576
LFSC01000006
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
24173
24248
+
Val
TAC
[ENA]
¡û
>W1610605590
LFSC01000018
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
22154
22079
-
Val
TAC
[ENA]
¡û
>W1610605598
LFSC01000032
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
28066
27991
-
Val
TAC
[ENA]
¡û
>W1610605786
LFSH01000002
Bacillota
Clostridiales bacterium DTU070 [LFSH]
1738
1813
+
Val
TAC
[ENA]
¡û
>W1610605974
LFSL01000112
Bacillota
Clostridiales bacterium DTU058 [LFSL]
21138
21063
-
Val
TAC
[ENA]
¡û
>W1610605995
LFSL01000154
Bacillota
Clostridiales bacterium DTU058 [LFSL]
60771
60846
+
Val
TAC
[ENA]
¡û
>W1710040856
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
202997
203072
+
Val
TAC
[ENA]
¡û
>W1710726863
LFSC01000006
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
24173
24248
+
Val
TAC
[ENA]
¡û
>W1710726877
LFSC01000018
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
22154
22079
-
Val
TAC
[ENA]
¡û
>W1710726885
LFSC01000032
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
28066
27991
-
Val
TAC
[ENA]
¡û
>W1710727073
LFSH01000002
Bacillota
Clostridiales bacterium DTU070 [LFSH]
1738
1813
+
Val
TAC
[ENA]
¡û
>W1710727261
LFSL01000112
Bacillota
Clostridiales bacterium DTU058 [LFSL]
21138
21063
-
Val
TAC
[ENA]
¡û
>W1710727282
LFSL01000154
Bacillota
Clostridiales bacterium DTU058 [LFSL]
60771
60846
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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