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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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Representative sequence of each cluster
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301952 (128 seq.)
>W1710874413
LMNO01000007
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
295012
294937
-
Ala
CGC
[ENA]
¡û
>W1710874505
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1111054
1111129
+
Ala
CGC
[ENA]
¡û
>W1710874595
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
1258412
1258487
+
Ala
CGC
[ENA]
¡û
>W1710876878
LMPP01000009
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
294727
294652
-
Ala
CGC
[ENA]
¡û
>W131224981
AUDF01000002
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
72806
72731
-
Ala
CGC
[ENA]
¡û
>W1711747222
MUKN01000050
Actinomycetota
Rathayibacter sp. VKM Ac-2630 [MUKN]
11368
11293
-
Ala
CGC
[ENA]
¡û
>WENV180094954
MTBK01040550
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
125
50
-
Ala
CGC
[ENA]
¢þ
>C191056202
CP028129
Actinomycetota
Rathayibacter rathayi DSM 7485 [CP028129]
592428
592503
+
Ala
CGC
-
¡û
>C191056274
CP028130
Actinomycetota
Rathayibacter iranicus NCCPB 2253 [CP028130]
1789875
1789800
-
Ala
CGC
-
¡û
>C191056502
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
384882
384957
+
Ala
CGC
-
¡û
>W1911497490
OCNL01000004
Actinomycetota
Rathayibacter rathayi VKM Ac-1601 [OCNL]
285640
285565
-
Ala
CGC
[ENA]
¡û
>W1810276992
PSTL01000016
Actinomycetota
Rathayibacter sp. AY1A7 [PSTL]
50727
50652
-
Ala
CGC
[ENA]
¡û
>W1810277003
PSTM01000001
Actinomycetota
Rathayibacter sp. AY1A5 [PSTM]
65911
65986
+
Ala
CGC
[ENA]
¡û
>W1810277048
PSTN01000002
Actinomycetota
Rathayibacter sp. AY1A4 [PSTN]
147192
147267
+
Ala
CGC
[ENA]
¡û
>W1810277106
PSTO01000008
Actinomycetota
Rathayibacter sp. AY1A3 [PSTO]
120196
120271
+
Ala
CGC
[ENA]
¡û
>W1810277135
PSTP01000001
Actinomycetota
Rathayibacter sp. AY1A2 [PSTP]
434214
434139
-
Ala
CGC
[ENA]
¡û
>W1810277679
PSUB01000001
Actinomycetota
Rathayibacter sp. AY2B9 [PSUB]
160058
160133
+
Ala
CGC
[ENA]
¡û
>W1810277721
PSUC01000001
Actinomycetota
Rathayibacter sp. AY2B7 [PSUC]
96779
96704
-
Ala
CGC
[ENA]
¡û
>W1810277790
PSUD01000016
Actinomycetota
Rathayibacter rathayi AY2B6 [PSUD]
35965
36040
+
Ala
CGC
[ENA]
¡û
>W1810277808
PSUE01000002
Actinomycetota
Rathayibacter sp. AY2B5 [PSUE]
158069
158144
+
Ala
CGC
[ENA]
¡û
>W1810277861
PSUF01000004
Actinomycetota
Rathayibacter rathayi AY2B4 [PSUF]
81116
81191
+
Ala
CGC
[ENA]
¡û
>W1810277906
PSUG01000010
Actinomycetota
Rathayibacter sp. AY2B3 [PSUG]
27090
27165
+
Ala
CGC
[ENA]
¡û
>W1810277952
PSUH01000019
Actinomycetota
Rathayibacter sp. AY2B1 [PSUH]
31598
31523
-
Ala
CGC
[ENA]
¡û
>W1810277995
PSUI01000014
Actinomycetota
Rathayibacter rathayi AY2A9 [PSUI]
32396
32321
-
Ala
CGC
[ENA]
¡û
>W1810278037
PSUJ01000014
Actinomycetota
Rathayibacter rathayi AY2A5 [PSUJ]
32396
32321
-
Ala
CGC
[ENA]
¡û
>W1810278081
PSUK01000013
Actinomycetota
Rathayibacter rathayi AY2A3 [PSUK]
32393
32318
-
Ala
CGC
[ENA]
¡û
>W1810278131
PSUL01000014
Actinomycetota
Rathayibacter rathayi AY1I9 [PSUL]
32043
32118
+
Ala
CGC
[ENA]
¡û
>W1810278160
PSUM01000008
Actinomycetota
Rathayibacter tritici ATCC 11402 [PSUM]
40078
40003
-
Ala
CGC
[ENA]
¡û
>W1810278192
PSUN01000001
Actinomycetota
Rathayibacter tritici GSPB 2752 [PSUN]
147041
146966
-
Ala
CGC
[ENA]
¡û
>W1810278242
PSUO01000003
Actinomycetota
Rathayibacter tritici GSPB 2748 [PSUO]
148043
147968
-
Ala
CGC
[ENA]
¡û
>W1810278302
PSUP01000014
Actinomycetota
Rathayibacter rathayi ICMP 2576 [PSUP]
32049
32124
+
Ala
CGC
[ENA]
¡û
>W1810278342
PSUQ01000013
Actinomycetota
Rathayibacter rathayi ICMP 2572 [PSUQ]
32409
32334
-
Ala
CGC
[ENA]
¡û
>W1810278382
PSUR01000014
Actinomycetota
Rathayibacter rathayi AY1H7 [PSUR]
32024
32099
+
Ala
CGC
[ENA]
¡û
>W1810278412
PSUS01000002
Actinomycetota
Rathayibacter rathayi AY1H6 [PSUS]
32076
32001
-
Ala
CGC
[ENA]
¡û
>W1810278482
PSUT01000023
Actinomycetota
Rathayibacter rathayi AY1H5 [PSUT]
32096
32021
-
Ala
CGC
[ENA]
¡û
>W1810278514
PSUU01000024
Actinomycetota
Rathayibacter sp. AY1H3 [PSUU]
28540
28465
-
Ala
CGC
[ENA]
¡û
>W1810278540
PSUV01000001
Actinomycetota
Rathayibacter sp. AY1H2 [PSUV]
414112
414037
-
Ala
CGC
[ENA]
¡û
>W1810278605
PSUW01000011
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
65877
65952
+
Ala
CGC
[ENA]
¡û
>W1810278647
PSUX01000024
Actinomycetota
Rathayibacter rathayi AY1G7 [PSUX]
9297
9372
+
Ala
CGC
[ENA]
¡û
>W1810278682
PSUY01000005
Actinomycetota
Rathayibacter rathayi AY1G4 [PSUY]
32477
32402
-
Ala
CGC
[ENA]
¡û
>W1810278741
PSUZ01000020
Actinomycetota
Rathayibacter sp. AY1G1 [PSUZ]
50250
50175
-
Ala
CGC
[ENA]
¡û
>W1810278774
PSVA01000007
Actinomycetota
Rathayibacter sp. AY1F9 [PSVA]
65687
65762
+
Ala
CGC
[ENA]
¡û
>W1810278830
PSVB01000016
Actinomycetota
Rathayibacter sp. AY1F8 [PSVB]
27018
27093
+
Ala
CGC
[ENA]
¡û
>W1810278856
PSVC01000006
Actinomycetota
Rathayibacter sp. AY1F7 [PSVC]
63686
63611
-
Ala
CGC
[ENA]
¡û
>W1810278907
PSVD01000009
Actinomycetota
Rathayibacter sp. AY1F6 [PSVD]
70013
70088
+
Ala
CGC
[ENA]
¡û
>W1810278935
PSVE01000005
Actinomycetota
Rathayibacter sp. AY1F4 [PSVE]
155210
155285
+
Ala
CGC
[ENA]
¡û
>W1810278970
PSVF01000001
Actinomycetota
Rathayibacter sp. AY1F3 [PSVF]
125199
125124
-
Ala
CGC
[ENA]
¡û
>W1810279031
PSVG01000007
Actinomycetota
Rathayibacter sp. AY1F2 [PSVG]
112898
112973
+
Ala
CGC
[ENA]
¡û
>W1810279055
PSVH01000001
Actinomycetota
Rathayibacter sp. AY1E9 [PSVH]
415310
415235
-
Ala
CGC
[ENA]
¡û
>W1810279097
PSVI01000001
Actinomycetota
Rathayibacter sp. AY1E8 [PSVI]
42990
43065
+
Ala
CGC
[ENA]
¡û
>W1810279158
PSVJ01000010
Actinomycetota
Rathayibacter rathayi AY1E7 [PSVJ]
35943
36018
+
Ala
CGC
[ENA]
¡û
>W1810279203
PSVK01000008
Actinomycetota
Rathayibacter sp. AY1E6 [PSVK]
50715
50640
-
Ala
CGC
[ENA]
¡û
>W1810279240
PSVL01000010
Actinomycetota
Rathayibacter sp. AY1E5 [PSVL]
50290
50215
-
Ala
CGC
[ENA]
¡û
>W1810279275
PSVM01000004
Actinomycetota
Rathayibacter sp. AY1E4 [PSVM]
50851
50776
-
Ala
CGC
[ENA]
¡û
>W1810279322
PSVN01000003
Actinomycetota
Rathayibacter sp. AY1E3 [PSVN]
178251
178176
-
Ala
CGC
[ENA]
¡û
>W1810279363
PSVO01000002
Actinomycetota
Rathayibacter sp. AY1E2 [PSVO]
289463
289388
-
Ala
CGC
[ENA]
¡û
>W1810279416
PSVP01000026
Actinomycetota
Rathayibacter sp. AY1E1 [PSVP]
48465
48540
+
Ala
CGC
[ENA]
¡û
>W1810279454
PSVQ01000009
Actinomycetota
Rathayibacter sp. AY1D9 [PSVQ]
50813
50738
-
Ala
CGC
[ENA]
¡û
>W1810279507
PSVR01000014
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
32400
32325
-
Ala
CGC
[ENA]
¡û
>W1810279533
PSVS01000016
Actinomycetota
Rathayibacter sp. AY1D7 [PSVS]
5337
5262
-
Ala
CGC
[ENA]
¡û
>W1810279575
PSVT01000005
Actinomycetota
Rathayibacter rathayi AY1D6 [PSVT]
134306
134231
-
Ala
CGC
[ENA]
¡û
>W1810279619
PSVU01000008
Actinomycetota
Rathayibacter sp. AY1D5 [PSVU]
42920
42995
+
Ala
CGC
[ENA]
¡û
>W1810279658
PSVV01000002
Actinomycetota
Rathayibacter sp. AY1D4 [PSVV]
141489
141564
+
Ala
CGC
[ENA]
¡û
>W1810279733
PSVW01000019
Actinomycetota
Rathayibacter sp. AY1D3 [PSVW]
50211
50136
-
Ala
CGC
[ENA]
¡û
>W1810279743
PSVX01000007
Actinomycetota
Rathayibacter sp. AY1D2 [PSVX]
50245
50170
-
Ala
CGC
[ENA]
¡û
>W1810279793
PSVY01000002
Actinomycetota
Rathayibacter sp. AY1D1 [PSVY]
101034
101109
+
Ala
CGC
[ENA]
¡û
>W1810279829
PSVZ01000001
Actinomycetota
Rathayibacter sp. AY1C9 [PSVZ]
101565
101640
+
Ala
CGC
[ENA]
¡û
>W1810279873
PSWA01000001
Actinomycetota
Rathayibacter rathayi AY1C8 [PSWA]
137257
137182
-
Ala
CGC
[ENA]
¡û
>W1810279942
PSWB01000016
Actinomycetota
Rathayibacter sp. AY1C7 [PSWB]
51768
51693
-
Ala
CGC
[ENA]
¡û
>W1810279986
PSWC01000019
Actinomycetota
Rathayibacter sp. AY1C6 [PSWC]
26896
26971
+
Ala
CGC
[ENA]
¡û
>W1810280003
PSWD01000001
Actinomycetota
Rathayibacter sp. AY1C5 [PSWD]
414078
414003
-
Ala
CGC
[ENA]
¡û
>W1810280066
PSWE01000012
Actinomycetota
Rathayibacter sp. AY1C4 [PSWE]
49951
49876
-
Ala
CGC
[ENA]
¡û
>W1810280107
PSWF01000009
Actinomycetota
Rathayibacter sp. AY1C3 [PSWF]
31555
31480
-
Ala
CGC
[ENA]
¡û
>W1810280136
PSWG01000002
Actinomycetota
Rathayibacter sp. AY1C2 [PSWG]
327396
327321
-
Ala
CGC
[ENA]
¡û
>W1810280187
PSWH01000007
Actinomycetota
Rathayibacter sp. AY1C1 [PSWH]
65638
65713
+
Ala
CGC
[ENA]
¡û
>W1810280240
PSWI01000015
Actinomycetota
Rathayibacter rathayi AY1B9 [PSWI]
31905
31830
-
Ala
CGC
[ENA]
¡û
>W1810280279
PSWJ01000008
Actinomycetota
Rathayibacter sp. AY1B8 [PSWJ]
65231
65306
+
Ala
CGC
[ENA]
¡û
>W1810280321
PSWK01000013
Actinomycetota
Rathayibacter sp. AY1B7 [PSWK]
50879
50804
-
Ala
CGC
[ENA]
¡û
>W1810280343
PSWL01000001
Actinomycetota
Rathayibacter sp. AY1B6 [PSWL]
177877
177802
-
Ala
CGC
[ENA]
¡û
>W1810280421
PSWM01000024
Actinomycetota
Rathayibacter sp. AY1B5 [PSWM]
25862
25937
+
Ala
CGC
[ENA]
¡û
>W1810280450
PSWN01000006
Actinomycetota
Rathayibacter sp. AY1B4 [PSWN]
92617
92692
+
Ala
CGC
[ENA]
¡û
>W1810280504
PSWO01000027
Actinomycetota
Rathayibacter sp. AY1B1 [PSWO]
23932
24007
+
Ala
CGC
[ENA]
¡û
>W1810280535
PSWP01000013
Actinomycetota
Rathayibacter rathayi AY1A8 [PSWP]
32390
32315
-
Ala
CGC
[ENA]
¡û
>W1810280569
PSWQ01000019
Actinomycetota
Rathayibacter sp. RFBD1 [PSWQ]
116499
116574
+
Ala
CGC
[ENA]
¡û
>W1810280626
PSWR01000084
Actinomycetota
Rathayibacter sp. TRS19 [PSWR]
26853
26928
+
Ala
CGC
[ENA]
¡û
>W1810280669
PSWS01000048
Actinomycetota
Rathayibacter tritici DSM 7486 [PSWS]
31687
31762
+
Ala
CGC
[ENA]
¡û
>W1810280712
PSWT01000041
Actinomycetota
Rathayibacter tritici ICMP 2628 [PSWT]
30355
30430
+
Ala
CGC
[ENA]
¡û
>W1810280756
PSWU01000004
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
423885
423959
+
Ala
CGC
[ENA]
¡û
>W1810280799
PSWV01000005
Actinomycetota
Rathayibacter toxicus FH89 [PSWV]
423034
423108
+
Ala
CGC
[ENA]
¡û
>W1810280842
PSWW01000005
Actinomycetota
Rathayibacter toxicus FH86 [PSWW]
423037
423111
+
Ala
CGC
[ENA]
¡û
>W1810280885
PSWX01000004
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
423884
423958
+
Ala
CGC
[ENA]
¡û
>W1810280928
PSWY01000005
Actinomycetota
Rathayibacter toxicus FH82 [PSWY]
420461
420535
+
Ala
CGC
[ENA]
¡û
>W1810280971
PSWZ01000004
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
423406
423480
+
Ala
CGC
[ENA]
¡û
>W1810281014
PSXA01000003
Actinomycetota
Rathayibacter toxicus FH78 [PSXA]
417972
418046
+
Ala
CGC
[ENA]
¡û
>W1810281057
PSXB01000002
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
484606
484680
+
Ala
CGC
[ENA]
¡û
>W1810281112
PSXC01000005
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
422759
422833
+
Ala
CGC
[ENA]
¡û
>W1810281155
PSXD01000003
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
423884
423958
+
Ala
CGC
[ENA]
¡û
>W1810281198
PSXE01000005
Actinomycetota
Rathayibacter toxicus FH146 [PSXE]
423406
423480
+
Ala
CGC
[ENA]
¡û
>W1810281241
PSXF01000004
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
420363
420437
+
Ala
CGC
[ENA]
¡û
>W1810281284
PSXG01000004
Actinomycetota
Rathayibacter toxicus FH142 [PSXG]
423033
423107
+
Ala
CGC
[ENA]
¡û
>W1810281327
PSXH01000003
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
424048
424122
+
Ala
CGC
[ENA]
¡û
>W1810281370
PSXI01000005
Actinomycetota
Rathayibacter toxicus FH140 [PSXI]
423388
423462
+
Ala
CGC
[ENA]
¡û
>W1810281414
PSXJ01000005
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
423034
423108
+
Ala
CGC
[ENA]
¡û
>W1810281457
PSXK01000005
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
422769
422843
+
Ala
CGC
[ENA]
¡û
>W1810281500
PSXL01000004
Actinomycetota
Rathayibacter toxicus FH137 [PSXL]
423885
423959
+
Ala
CGC
[ENA]
¡û
>W1810281540
PSXM01000004
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
422181
422255
+
Ala
CGC
[ENA]
¡û
>W1810281587
PSXN01000006
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
329170
329244
+
Ala
CGC
[ENA]
¡û
>W1810281631
PSXO01000029
Actinomycetota
Rathayibacter rathayi Z022 [PSXO]
9299
9374
+
Ala
CGC
[ENA]
¡û
>W1810281674
PSXP01000012
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
36007
36082
+
Ala
CGC
[ENA]
¡û
>W1810281716
PSXQ01000017
Actinomycetota
Rathayibacter rathayi Z007 [PSXQ]
81113
81188
+
Ala
CGC
[ENA]
¡û
>W1810281760
PSXR01000031
Actinomycetota
Rathayibacter rathayi CS6 [PSXR]
3593
3668
+
Ala
CGC
[ENA]
¡û
>W1810281824
PSXS01000026
Actinomycetota
Rathayibacter iranicus DSM 7484 [PSXS]
27670
27595
-
Ala
CGC
[ENA]
¡û
>W1810281865
PSXT01000029
Actinomycetota
Rathayibacter iranicus TRS5 [PSXT]
8678
8603
-
Ala
CGC
[ENA]
¡û
>W1810281908
PSXU01000036
Actinomycetota
Rathayibacter iranicus FH154 [PSXU]
8866
8791
-
Ala
CGC
[ENA]
¡û
>W1810281938
PSXV01000010
Actinomycetota
Rathayibacter sp. AY1A1 [PSXV]
93700
93625
-
Ala
CGC
[ENA]
¡û
>W1810452312
PZPL01000001
Actinomycetota
Rathayibacter caricis DSM 15933 [PZPL]
2296279
2296353
+
Ala
CGC
[ENA]
¡û
>W1810595376
QGDV01000004
Actinomycetota
Rathayibacter iranicus VKM Ac-1602 [QGDV]
140891
140816
-
Ala
CGC
[ENA]
¡û
>C151073229
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
776607
776682
+
Ala
CGC
[Ensembl]
¡û
>W1511589843
LBFI01000024
Actinomycetota
Rathayibacter toxicus FH142 [LBFI]
421416
421491
+
Ala
CGC
[ENA]
¡û
>C161055015
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
651638
651563
-
Ala
CGC
-
¡û
>C161089164
CP015515
Actinomycetota
Rathayibacter tritici NCPPB 1953 [CP015515]
2316845
2316770
-
Ala
CGC
[Ensembl]
¡û
>W1610630636
LIIN01000268
Actinomycetota
Rathayibacter tanaceti [LIIN]
925
850
-
Ala
CGC
[ENA]
¡û
>W1610736759
LMNO01000007
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
295012
294937
-
Ala
CGC
[ENA]
¡û
>W1610736851
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1111054
1111129
+
Ala
CGC
[ENA]
¡û
>W1610736941
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
1258412
1258487
+
Ala
CGC
[ENA]
¡û
>W1610739224
LMPP01000009
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
294727
294652
-
Ala
CGC
[ENA]
¡û
>W1710608929
FXBM01000001
Actinomycetota
Rathayibacter oskolensis VKM Ac-2121 [FXBM]
736783
736858
+
Ala
CGC
[ENA]
¡û
>W1710761775
LIIN01000268
Actinomycetota
Rathayibacter tanaceti [LIIN]
925
850
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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