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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302081 (91 seq.)
>W1710785299
LJHS01000057
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
2020
2095
+
Trp
CCA
[ENA]
¡û
>W1710785666
LJIB01000013
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
16574
16499
-
Trp
CCA
[ENA]
¡û
>W1710860062
LMCO01000049
Alphaproteobacteria
Ensifer sp. Root31 [LMCO]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1710861521
LMDR01000004
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
16610
16535
-
Trp
CCA
[ENA]
¡û
>W1710861637
LMDT01000040
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1710861836
LMDX01000035
Alphaproteobacteria
Ensifer sp. Root127 [LMDX]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1710863803
LMFK01000035
Alphaproteobacteria
Ensifer sp. Root142 [LMFK]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1710867873
LMIQ01000027
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1710868235
LMIX01000035
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1710868572
LMJE01000003
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
16606
16531
-
Trp
CCA
[ENA]
¡û
>W1710874822
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
16537
16462
-
Trp
CCA
[ENA]
¡û
>W1710875231
LMOF01000007
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
3189
3264
+
Trp
CCA
[ENA]
¡û
>W1710876381
LMPE01000008
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
17310
17235
-
Trp
CCA
[ENA]
¡û
>W1710877385
LMQB01000010
Alphaproteobacteria
Rhizobium sp. Leaf371 [LMQB]
2414
2489
+
Trp
CCA
[ENA]
¡û
>W1710877490
LMQD01000013
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
2412
2487
+
Trp
CCA
[ENA]
¡û
>W1710877545
LMQE01000002
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
2477
2552
+
Trp
CCA
[ENA]
¡û
>W1711081098
LSRO01000117
Alphaproteobacteria
Rhizobium sp. 58 [LSRO]
7677
7752
+
Trp
CCA
[ENA]
¡û
>W1711081135
LSRP01000079
Alphaproteobacteria
Pararhizobium antarcticum 59 [LSRP]
7677
7752
+
Trp
CCA
[ENA]
¡û
>W1711337988
MBSR01000086
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
573
648
+
Trp
CCA
[ENA]
¡û
>W1711338035
MBSS01000035
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
573
648
+
Trp
CCA
[ENA]
¡û
>W1711338094
MBST01000050
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
573
648
+
Trp
CCA
[ENA]
¡û
>W1711489126
MKIN01000025
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
3551
3626
+
Trp
CCA
[ENA]
¡û
>W1711586118
MOAI01000060
Alphaproteobacteria
Ensifer sp. 1H6 [MOAI]
974
1049
+
Trp
CCA
[ENA]
¡û
>W1711751573
MUNW01000032
Alphaproteobacteria
Sinorhizobium sp. A49 [MUNW]
264719
264644
-
Trp
CCA
[ENA]
¡û
>W1711765458
MUXO01000007
Alphaproteobacteria
Pseudorhizobium flavum [MUXO]
261
336
+
Trp
CCA
[ENA]
¡û
>C171049850
CP016450
Alphaproteobacteria
Sinorhizobium sp. RAC02 [CP016450]
1525719
1525644
-
Trp
CCA
-
¡û
>C171050043
CP016499
Alphaproteobacteria
Agrobacterium sp. RAC06 [CP016499]
1033402
1033327
-
Trp
CCA
-
¡û
>W131036220
ALJF01000027
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
17846
17771
-
Trp
CCA
[ENA]
¡û
>WENV181414907
OGCL01002143
[OGCL] hot springs metagenome; Hot spring water
12951
12876
-
Trp
CCA
[ENA]
¢þ
>WENV183734315
PJTZ01001743
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
3276
3201
-
Trp
CCA
[ENA]
¢þ
>WENV171003614
NNBU01000760
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
13302
13227
-
Trp
CCA
[ENA]
¢þ
>W141712243
JMQK01000040
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
17608
17533
-
Trp
CCA
[ENA]
¡û
>W141739466
JNNU01000040
Alphaproteobacteria
Neorhizobium vignae [JNNU]
16652
16577
-
Trp
CCA
[ENA]
¡û
>W141776119
JOKI01000045
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
323
398
+
Trp
CCA
[ENA]
¡û
>W141776161
JOKJ01000051
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
17625
17550
-
Trp
CCA
[ENA]
¡û
>W1810195506
PKRP01000003
Alphaproteobacteria
Rhizobium sp. TH135 [PKRP]
105261
105336
+
Trp
CCA
[ENA]
¡û
>W1810345989
PVBF01000003
Alphaproteobacteria
Neorhizobium tomejilense T20_22 [PVBF]
584192
584117
-
Trp
CCA
[ENA]
¡û
>W1810346057
PVBG01000047
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
763
838
+
Trp
CCA
[ENA]
¡û
>W1810346077
PVBH01000002
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
282815
282740
-
Trp
CCA
[ENA]
¡û
>W1810346115
PVBI01000002
Alphaproteobacteria
Neorhizobium sp. T25_13 [PVBI]
347200
347275
+
Trp
CCA
[ENA]
¡û
>W1810346182
PVBJ01000005
Alphaproteobacteria
Neorhizobium sp. T25_27 [PVBJ]
273002
272927
-
Trp
CCA
[ENA]
¡û
>W1810346214
PVBK01000002
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
130728
130803
+
Trp
CCA
[ENA]
¡û
>W1810346282
PVBL01000015
Alphaproteobacteria
Neorhizobium sp. T6_25 [PVBL]
85975
86050
+
Trp
CCA
[ENA]
¡û
>W1810346372
PVBN01000008
Alphaproteobacteria
Neorhizobium alkalisoli DSM 21826 [PVBN]
27375
27450
+
Trp
CCA
[ENA]
¡û
>W1810368544
PVZR01000008
Alphaproteobacteria
Ensifer sp. NM-2 [PVZR]
248546
248621
+
Trp
CCA
[ENA]
¡û
>W1810665679
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
3329532
3329457
-
Trp
CCA
[ENA]
¡û
>W1810670730
QJRY01000015
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
16741
16666
-
Trp
CCA
[ENA]
¡û
>W1810671296
QJSR01000001
Alphaproteobacteria
Rhizobium sp. PP-CC-3A-592 [QJSR]
246613
246538
-
Trp
CCA
[ENA]
¡û
>W1810671358
QJSS01000030
Alphaproteobacteria
Rhizobium sp. PP-WC-1G-195 [QJSS]
16655
16580
-
Trp
CCA
[ENA]
¡û
>W1810671495
QJSV01000028
Alphaproteobacteria
Rhizobium sp. PP-F2F-G20b [QJSV]
2811
2886
+
Trp
CCA
[ENA]
¡û
>W1810672284
QJTH01000025
Alphaproteobacteria
Rhizobium sp. PP-F2F-G38 [QJTH]
16655
16580
-
Trp
CCA
[ENA]
¡û
>C151098039
FO082820
Alphaproteobacteria
Pseudorhizobium banfieldiae NT-26 [FO082820]
1422324
1422399
+
Trp
CCA
[Ensembl]
¡û
>C151101641
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
1248372
1248447
+
Trp
CCA
[Ensembl]
¡û
>C151101688
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
1210620
1210695
+
Trp
CCA
[Ensembl]
¡û
>W1510052898
CCRG01000049
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRG]
1359
1434
+
Trp
CCA
[ENA]
¡û
>W1510052939
CCRH01000035
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRH]
1013
1088
+
Trp
CCA
[ENA]
¡û
>W1510052982
CCRI01000023
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRI]
60589
60514
-
Trp
CCA
[ENA]
¡û
>W1510053028
CCRJ01000031
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
16552
16477
-
Trp
CCA
[ENA]
¡û
>W1510053072
CCRK01000027
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
16629
16554
-
Trp
CCA
[ENA]
¡û
>W1510053086
CCRL01000001
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
377050
376975
-
Trp
CCA
[ENA]
¡û
>W1510053158
CCRM01000058
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRM]
16586
16511
-
Trp
CCA
[ENA]
¡û
>W1510053187
CCRN01000006
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRN]
65047
64972
-
Trp
CCA
[ENA]
¡û
>C161005660
CP007236
Alphaproteobacteria
Ensifer adhaerens OV14 [CP007236, CP007237]
2330425
2330500
+
Trp
CCA
[Ensembl]
¡û
>W121044146
AHZC01000437
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
16558
16483
-
Trp
CCA
[ENA]
¡û
>W121086644
AKKC01000648
Alphaproteobacteria
Rhizobium sp. CF080 [AKKC]
3417
3342
-
Trp
CCA
[ENA]
¡û
>W1610436520
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 [FJUR]
2137094
2137169
+
Trp
CCA
[ENA]
¡û
>W1610649105
LJHS01000057
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
2020
2095
+
Trp
CCA
[ENA]
¡û
>W1610649472
LJIB01000013
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
16574
16499
-
Trp
CCA
[ENA]
¡û
>W1610722408
LMCO01000049
Alphaproteobacteria
Ensifer sp. Root31 [LMCO]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1610723867
LMDR01000004
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
16610
16535
-
Trp
CCA
[ENA]
¡û
>W1610723983
LMDT01000040
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1610724182
LMDX01000035
Alphaproteobacteria
Ensifer sp. Root127 [LMDX]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1610726149
LMFK01000035
Alphaproteobacteria
Ensifer sp. Root142 [LMFK]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1610730219
LMIQ01000027
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1610730581
LMIX01000035
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
16643
16568
-
Trp
CCA
[ENA]
¡û
>W1610730918
LMJE01000003
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
16606
16531
-
Trp
CCA
[ENA]
¡û
>W1610737168
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
16537
16462
-
Trp
CCA
[ENA]
¡û
>W1610737577
LMOF01000007
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
3189
3264
+
Trp
CCA
[ENA]
¡û
>W1610738727
LMPE01000008
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
17310
17235
-
Trp
CCA
[ENA]
¡û
>W1610739731
LMQB01000010
Alphaproteobacteria
Rhizobium sp. Leaf371 [LMQB]
2414
2489
+
Trp
CCA
[ENA]
¡û
>W1610739836
LMQD01000013
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
2412
2487
+
Trp
CCA
[ENA]
¡û
>W1610739891
LMQE01000002
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
2477
2552
+
Trp
CCA
[ENA]
¡û
>W1611066916
MBSR01000086
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
573
648
+
Trp
CCA
[ENA]
¡û
>W1611066963
MBSS01000035
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
573
648
+
Trp
CCA
[ENA]
¡û
>W1611067022
MBST01000050
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
573
648
+
Trp
CCA
[ENA]
¡û
>W1710436256
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 [FJUR]
2137094
2137169
+
Trp
CCA
[ENA]
¡û
>W1710540111
FNWM01000010
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
4125
4200
+
Trp
CCA
[ENA]
¡û
>W1710552205
FOGR01000003
Alphaproteobacteria
Rhizobium sp. NFR03 [FOGR]
265922
265847
-
Trp
CCA
[ENA]
¡û
>W1710556832
FOKM01000030
Alphaproteobacteria
Rhizobium sp. NFR07 [FOKM]
17744
17669
-
Trp
CCA
[ENA]
¡û
>W1710596544
FTMQ01000003
Alphaproteobacteria
Rhizobium sp. RU33A [FTMQ]
543367
543442
+
Trp
CCA
[ENA]
¡û
>W1710606415
FWXU01000018
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
33078
33003
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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