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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302133 (43 seq.)
>W1710822188
LKUR01000017
Actinomycetota
Bifidobacterium bifidum [LKUR]
228465
228392
-
Val
CAC
[ENA]
¡û
>W1710822207
LKUR01000020
Actinomycetota
Bifidobacterium bifidum [LKUR]
146454
146529
+
Val
CAC
[ENA]
¡û
>WENV180136578
OATN01000103
[OATN] human gut metagenome; faeces
43577
43504
-
Val
CAC
[ENA]
¢þ
>WENV180136735
OATN01000707
[OATN] human gut metagenome; faeces
2186
2113
-
Val
CAC
[ENA]
¢þ
>WENV180405184
OBSE01020113
[OBSE] human gut metagenome; ENVO:feces
143
216
+
Val
CAC
[ENA]
¢þ
>WENV180452609
OBXK01000051
[OBXK] human gut metagenome; faeces
83326
83399
+
Val
CAC
[ENA]
¢þ
>WENV180452651
OBXK01000087
[OBXK] human gut metagenome; faeces
68295
68222
-
Val
CAC
[ENA]
¢þ
>WENV180473533
OBYR01000380
[OBYR] human gut metagenome; faeces
19329
19402
+
Val
CAC
[ENA]
¢þ
>WENV180605041
OCPS01078088
[OCPS] human gut metagenome; human gut
228
301
+
Val
CAC
[ENA]
¢þ
>WENV181903642
OGXX01002025
[OGXX] human gut metagenome; faeces
423
496
+
Val
CAC
[ENA]
¢þ
>W08009118
ABOT01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
344758
344833
+
Val
CAC
[ENA]
¡û
>WENV182324356
OHYR01002921
[OHYR] human gut metagenome; feces
910
837
-
Val
CAC
[ENA]
¢þ
>WENV182628676
OJKQ01025469
[OJKQ] metagenome; faeces
848
921
+
Val
CAC
[ENA]
¢þ
>WENV182805077
OJVC01000004
[OJVC] human gut metagenome; human gut
76328
76255
-
Val
CAC
[ENA]
¢þ
>WENV182805114
OJVC01000134
[OJVC] human gut metagenome; human gut
1902
1975
+
Val
CAC
[ENA]
¢þ
>WENV182821821
OKBA01002267
[OKBA] human gut metagenome; human gut
98
171
+
Val
CAC
[ENA]
¢þ
>WENV182947832
OKVN01000109
[OKVN] human gut metagenome; human gut
926
999
+
Val
CAC
[ENA]
¢þ
>WENV182947869
OKVN01000193
[OKVN] human gut metagenome; human gut
9086
9159
+
Val
CAC
[ENA]
¢þ
>WENV183314066
OLVR01000640
[OLVR] human gut metagenome; faeces
13815
13888
+
Val
CAC
[ENA]
¢þ
>WENV183575974
OOCI01016360
[OOCI] human gut metagenome; human gut
90
17
-
Val
CAC
[ENA]
¢þ
>C191057559
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
970746
970671
-
Val
CAC
-
¡û
>C191073873
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
959393
959319
-
Val
CAC
-
¡û
>W141524073
JGYU01000004
Actinomycetota
Bifidobacterium choerinum [JGYU]
70783
70708
-
Val
CAC
[ENA]
¡û
>W141524677
JGZG01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
401110
401037
-
Val
CAC
[ENA]
¡û
>W1911079591
NMYC01000001
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
468093
468020
-
Val
CAC
[ENA]
¡û
>W1810542322
QDIZ01000006
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
344984
345058
+
Val
CAC
[ENA]
¡û
>W1810793154
QRJN01000003
Actinomycetota
Bifidobacterium bifidum AM18-11 [QRJN]
252147
252220
+
Val
CAC
[ENA]
¡û
>W1810814827
QSAO01000004
Actinomycetota
Bifidobacterium bifidum AF11-25B [QSAO]
84812
84739
-
Val
CAC
[ENA]
¡û
>W1810832829
QSPI01000003
Actinomycetota
Bifidobacterium bifidum TM06-10 [QSPI]
31264
31337
+
Val
CAC
[ENA]
¡û
>W1810836950
QSSE01000002
Actinomycetota
Bifidobacterium bifidum TF06-13 [QSSE]
389750
389823
+
Val
CAC
[ENA]
¡û
>W1810836960
QSSE01000003
Actinomycetota
Bifidobacterium bifidum TF06-13 [QSSE]
201951
202024
+
Val
CAC
[ENA]
¡û
>W1810837154
QSSI01000001
Actinomycetota
Bifidobacterium bifidum TF05-39 [QSSI]
395530
395603
+
Val
CAC
[ENA]
¡û
>W1810837165
QSSI01000001
Actinomycetota
Bifidobacterium bifidum TF05-39 [QSSI]
1184762
1184689
-
Val
CAC
[ENA]
¡û
>C151024257
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
1016208
1016135
-
Val
CAC
[Ensembl]
¡û
>C10101370
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
959526
959451
-
Val
CAC
[Ensembl]
¡û
>C121001419
CP001361
Actinomycetota
Bifidobacterium bifidum BGN4 [CP001361]
346140
346213
+
Val
CAC
[Ensembl]
¡û
>C121001448
CP001361
Actinomycetota
Bifidobacterium bifidum BGN4 [CP001361]
1138093
1138018
-
Val
CAC
[Ensembl]
¡û
>C121013669
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
959521
959446
-
Val
CAC
[Ensembl]
¡û
>C161087457
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
1438058
1437983
-
Val
CAC
[Ensembl]
¡û
>W121031686
AHGW01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
186441
186366
-
Val
CAC
[ENA]
¡û
>W1610686247
LKUR01000017
Actinomycetota
Bifidobacterium bifidum [LKUR]
228465
228392
-
Val
CAC
[ENA]
¡û
>W1610686266
LKUR01000020
Actinomycetota
Bifidobacterium bifidum [LKUR]
146454
146529
+
Val
CAC
[ENA]
¡û
>W1710582439
FQTX01000002
Actinomycetota
Bifidobacterium merycicum DSM 6492 [FQTX]
1294
1221
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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