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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302182 (20 seq.)
>W1711411842
MGTP01000077
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_54_10 [MGTP]
9058
8982
-
Pro
GGG
[ENA]
¡û
>W1711414277
MGZH01000061
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
517
441
-
Pro
GGG
[ENA]
¡û
>W1711414300
MGZI01000023
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_48_7 [MGZI]
5903
5979
+
Pro
GGG
[ENA]
¡û
>W1711414361
MGZK01000001
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
34479
34403
-
Pro
GGG
[ENA]
¡û
>W1711420774
MHXL01000162
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWB2_53_15 [MHXL]
4220
4296
+
Pro
GGG
[ENA]
¡û
>W131228729
AUGE01000018
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
77442
77518
+
Pro
GGG
[ENA]
¡û
>C017496
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
2483797
2483721
-
Pro
GGG
[Ensembl]
¡û
>w024802
AAZA01000025
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
40421
40343
-
Pro
GGG
[ENA]
¡û
>w018106
AASH01000036
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
8706
8784
+
Pro
GGG
[ENA]
¡û
>W08010622
ABRF01000001
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
120379
120306
-
Pro
GGG
[ENA]
¡û
>C08005199
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
2302951
2303027
+
Pro
GGG
[Ensembl]
¡û
>WENV170002664
AGTN01095987
[AGTN] bioreactor metagenome; poplar biomass
434
510
+
Pro
GGG
[ENA]
¢þ
>W09103549
AAJH01000020
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
40663
40587
-
Pro
GGG
[ENA]
¡û
>W09133645
ACPJ01000085
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
13976
14052
+
Pro
GGG
[ENA]
¡û
>C09106369
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3712106
3712030
-
Pro
GGG
[Ensembl]
¡û
>C09106428
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
2594246
2594170
-
Pro
GGG
[Ensembl]
¡û
>C11109593
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
2668703
2668627
-
Pro
GGG
[Ensembl]
¡û
>W1610046445
BBCJ01000027
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
59542
59618
+
Pro
GGG
[ENA]
¡û
>W1710043241
BBCJ01000027
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
59542
59618
+
Pro
GGG
[ENA]
¡û
>W1710087187
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
1489562
1489486
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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