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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302242 (114 seq.)
>W1711411775
MGTN01000091
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
4294
4219
-
Phe
GAA
[ENA]
¡û
>W1711510645
MLBG01000105
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
5307
5232
-
Phe
GAA
[ENA]
¡û
>W1711581266
MNTW01000008
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
41296
41221
-
Phe
GAA
[ENA]
¡û
>C171129829
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1720732
1720657
-
Phe
GAA
-
¡û
>W131215428
ATUZ01000017
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
4187
4262
+
Phe
GAA
[ENA]
¡û
>W131215482
ATVA01000017
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
166016
165941
-
Phe
GAA
[ENA]
¡û
>C007544
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
3514674
3514749
+
Phe
GAA
[Ensembl]
¡û
>C008048
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
169323
169398
+
Phe
GAA
[Ensembl]
¡û
>C008149
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
3422970
3422895
-
Phe
GAA
[Ensembl]
¡û
>WENV180205819
OBAH01120876
[OBAH] human gut metagenome; human gut
229
303
+
Phe
GAA
[ENA]
¢þ
>WENV180276596
OBHU01046113
[OBHU] human gut metagenome; feces
86
161
+
Phe
GAA
[ENA]
¢þ
>W141027992
ALAO01000184
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
18611
18536
-
Phe
GAA
[ENA]
¡û
>WENV180324011
OBKR01120685
[OBKR] human gut metagenome; feces
216
291
+
Phe
GAA
[ENA]
¢þ
>WENV180534583
OCHM01019995
[OCHM] human gut metagenome; human gut
26
101
+
Phe
GAA
[ENA]
¢þ
>WENV180547805
OCIU01115669
[OCIU] human gut metagenome; human gut
308
383
+
Phe
GAA
[ENA]
¢þ
>WENV180963523
ODUN01231891
[ODUN] human metagenome; G_DNA_Stool
89
14
-
Phe
GAA
[ENA]
¢þ
>WENV180972316
ODUU01402752
[ODUU] human metagenome; G_DNA_Stool
84
159
+
Phe
GAA
[ENA]
¢þ
>WENV181024535
ODWX01103506
[ODWX] human metagenome; G_DNA_Stool
329
404
+
Phe
GAA
[ENA]
¢þ
>WENV181256675
OFFT01017138
[OFFT] mouse gut metagenome; faeces
1218
1293
+
Phe
GAA
[ENA]
¢þ
>WENV181271134
OFGF01007686
[OFGF] mouse gut metagenome; faeces
637
562
-
Phe
GAA
[ENA]
¢þ
>WENV181332610
OFMA01003438
[OFMA] human gut metagenome; human gut
6934
7009
+
Phe
GAA
[ENA]
¢þ
>WENV181341367
OFMH01052937
[OFMH] human gut metagenome; human gut
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV181445982
OGDS01037401
[OGDS] metagenome; Human gut stool
934
859
-
Phe
GAA
[ENA]
¢þ
>WENV181460686
OGEL01037401
[OGEL] metagenome; Human gut stool
934
859
-
Phe
GAA
[ENA]
¢þ
>WENV181468957
OGES01023545
[OGES] metagenome; Human gut stool
313
388
+
Phe
GAA
[ENA]
¢þ
>WENV181504077
OGGJ01022286
[OGGJ] metagenome; Human gut stool
1505
1430
-
Phe
GAA
[ENA]
¢þ
>WENV181525109
OGHJ01000012
[OGHJ] metagenome; Human gut stool
220446
220371
-
Phe
GAA
[ENA]
¢þ
>WENV181539981
OGIA01001445
[OGIA] metagenome; Human gut stool
8020
8095
+
Phe
GAA
[ENA]
¢þ
>WENV181578012
OGJY01000194
[OGJY] metagenome; Human gut stool
22181
22256
+
Phe
GAA
[ENA]
¢þ
>WENV181621633
OGMF01009986
[OGMF] metagenome; Human gut stool
2165
2240
+
Phe
GAA
[ENA]
¢þ
>WENV181640902
OGNF01000702
[OGNF] metagenome; Human gut stool
7906
7981
+
Phe
GAA
[ENA]
¢þ
>WENV181669536
OGOL01051163
[OGOL] human gut metagenome; faeces
216
141
-
Phe
GAA
[ENA]
¢þ
>WENV181710240
OGPN01039552
[OGPN] human gut metagenome; faeces
456
531
+
Phe
GAA
[ENA]
¢þ
>WENV181715208
OGPR01053556
[OGPR] human gut metagenome; faeces
451
526
+
Phe
GAA
[ENA]
¢þ
>W141169757
AXWQ01000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
17993
17918
-
Phe
GAA
[ENA]
¡û
>WENV181728143
OGQA01019818
[OGQA] human gut metagenome; faeces
152
77
-
Phe
GAA
[ENA]
¢þ
>WENV181767406
OGQZ01041164
[OGQZ] human gut metagenome; faeces
496
571
+
Phe
GAA
[ENA]
¢þ
>WENV181874813
OGXA01084109
[OGXA] human gut metagenome; faeces
192
117
-
Phe
GAA
[ENA]
¢þ
>WENV181883861
OGXI01016453
[OGXI] human gut metagenome; faeces
1604
1529
-
Phe
GAA
[ENA]
¢þ
>WENV181891241
OGXO01010021
[OGXO] human gut metagenome; faeces
4
79
+
Phe
GAA
[ENA]
¢þ
>WENV181898949
OGXT01030834
[OGXT] human gut metagenome; faeces
683
608
-
Phe
GAA
[ENA]
¢þ
>WENV181903727
OGXX01002514
[OGXX] human gut metagenome; faeces
8423
8348
-
Phe
GAA
[ENA]
¢þ
>WENV181910643
OGYC01026718
[OGYC] human gut metagenome; faeces
1187
1262
+
Phe
GAA
[ENA]
¢þ
>WENV181913805
OGYE01028965
[OGYE] human gut metagenome; faeces
701
776
+
Phe
GAA
[ENA]
¢þ
>WENV181937386
OGYV01071449
[OGYV] human gut metagenome; faeces
303
378
+
Phe
GAA
[ENA]
¢þ
>WENV181953184
OGZI01003477
[OGZI] human gut metagenome; faeces
6079
6004
-
Phe
GAA
[ENA]
¢þ
>WENV181954923
OGZK01000668
[OGZK] human gut metagenome; faeces
9130
9205
+
Phe
GAA
[ENA]
¢þ
>WENV181961230
OGZO01005115
[OGZO] human gut metagenome; faeces
4716
4641
-
Phe
GAA
[ENA]
¢þ
>WENV181973440
OHAA01046952
[OHAA] human gut metagenome; faeces
291
216
-
Phe
GAA
[ENA]
¢þ
>WENV181991366
OHAQ01001655
[OHAQ] human gut metagenome; faeces
3664
3739
+
Phe
GAA
[ENA]
¢þ
>WENV181995362
OHAT01002292
[OHAT] human gut metagenome; faeces
13767
13842
+
Phe
GAA
[ENA]
¢þ
>WENV182002095
OHAY01068899
[OHAY] human gut metagenome; faeces
103
28
-
Phe
GAA
[ENA]
¢þ
>WENV182012557
OHBM01042787
[OHBM] human gut metagenome; faeces
330
405
+
Phe
GAA
[ENA]
¢þ
>W141201104
AZAO01000008
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
34105
34030
-
Phe
GAA
[ENA]
¡û
>WENV182135195
OHKI01015992
[OHKI] human gut metagenome; feces
15
90
+
Phe
GAA
[ENA]
¢þ
>WENV182510101
OIWK01000689
[OIWK] human gut metagenome; faeces
8446
8521
+
Phe
GAA
[ENA]
¢þ
>WENV182595988
OJIY01000206
[OJIY] metagenome; faeces
3854
3779
-
Phe
GAA
[ENA]
¢þ
>WENV182664815
OJMP01022468
[OJMP] human gut metagenome; feces
97
172
+
Phe
GAA
[ENA]
¢þ
>WENV182676340
OJNQ01084127
[OJNQ] human gut metagenome; feces
356
431
+
Phe
GAA
[ENA]
¢þ
>WENV182693891
OJOH01012110
[OJOH] human gut metagenome; stool sample
1232
1307
+
Phe
GAA
[ENA]
¢þ
>WENV182710651
OJPD01000463
[OJPD] human gut metagenome; stool sample
20399
20324
-
Phe
GAA
[ENA]
¢þ
>WENV182719776
OJPN01000795
[OJPN] human gut metagenome; stool sample
18450
18375
-
Phe
GAA
[ENA]
¢þ
>WENV182727668
OJPW01000067
[OJPW] human gut metagenome; stool sample
55647
55572
-
Phe
GAA
[ENA]
¢þ
>WENV182731357
OJQA01000057
[OJQA] human gut metagenome; stool sample
29635
29560
-
Phe
GAA
[ENA]
¢þ
>WENV182880806
OKSA01001598
[OKSA] human gut metagenome; faeces
15403
15328
-
Phe
GAA
[ENA]
¢þ
>WENV182888858
OKSE01007651
[OKSE] human gut metagenome; faeces
260
335
+
Phe
GAA
[ENA]
¢þ
>WENV182930168
OKUQ01044677
[OKUQ] human gut metagenome; feces
21
96
+
Phe
GAA
[ENA]
¢þ
>WENV183029488
OLFW01000374
[OLFW] human gut metagenome; faeces
37211
37286
+
Phe
GAA
[ENA]
¢þ
>WENV183032690
OLFY01000455
[OLFY] human gut metagenome; faeces
25134
25059
-
Phe
GAA
[ENA]
¢þ
>WENV183034907
OLFZ01000837
[OLFZ] human gut metagenome; faeces
22365
22290
-
Phe
GAA
[ENA]
¢þ
>WENV183075283
OLIV01034980
[OLIV] human gut metagenome; stool sample
123
198
+
Phe
GAA
[ENA]
¢þ
>WENV183222660
OLQM01002389
[OLQM] human gut metagenome; faeces
4241
4316
+
Phe
GAA
[ENA]
¢þ
>WENV183258492
OLRN01006497
[OLRN] human gut metagenome; faeces
3437
3512
+
Phe
GAA
[ENA]
¢þ
>WENV183270701
OLRV01017486
[OLRV] human gut metagenome; faeces
52
127
+
Phe
GAA
[ENA]
¢þ
>WENV183281370
OLSB01083058
[OLSB] human gut metagenome; faeces
206
281
+
Phe
GAA
[ENA]
¢þ
>WENV183284680
OLSD01044421
[OLSD] human gut metagenome; faeces
952
1027
+
Phe
GAA
[ENA]
¢þ
>WENV183331343
OLWB01111315
[OLWB] human gut metagenome; faeces
358
433
+
Phe
GAA
[ENA]
¢þ
>WENV183339951
OLWL01001304
[OLWL] human gut metagenome; feces
13097
13022
-
Phe
GAA
[ENA]
¢þ
>WENV183359938
OLXI01001736
[OLXI] human gut metagenome; feces
1901
1976
+
Phe
GAA
[ENA]
¢þ
>WENV183492751
OMGI01000559
[OMGI] human gut metagenome; human gut
11696
11621
-
Phe
GAA
[ENA]
¢þ
>WENV183540195
OOAJ01004395
[OOAJ] human gut metagenome; human gut
557
632
+
Phe
GAA
[ENA]
¢þ
>WENV183560428
OOBT01048207
[OOBT] human gut metagenome; human gut
18
93
+
Phe
GAA
[ENA]
¢þ
>WENV183573892
OOCH01001258
[OOCH] human gut metagenome; human gut
15726
15651
-
Phe
GAA
[ENA]
¢þ
>WENV183575578
OOCI01003501
[OOCI] human gut metagenome; human gut
174
99
-
Phe
GAA
[ENA]
¢þ
>WENV183579385
OOCM01000767
[OOCM] human gut metagenome; human gut
2951
2876
-
Phe
GAA
[ENA]
¢þ
>WENV183597773
OODF01004984
[OODF] human gut metagenome; human gut
2717
2642
-
Phe
GAA
[ENA]
¢þ
>WENV183601071
OODJ01000204
[OODJ] human gut metagenome; human gut
29720
29645
-
Phe
GAA
[ENA]
¢þ
>WENV183632447
OOIF01003715
[OOIF] human gut metagenome; human gut
3631
3706
+
Phe
GAA
[ENA]
¢þ
>WENV170002893
AGTN01161646
[AGTN] bioreactor metagenome; poplar biomass
100
175
+
Phe
GAA
[ENA]
¢þ
>WENV170069832
CDZQ01004688
[CDZQ] gut metagenome; human stools
14410
14335
-
Phe
GAA
[ENA]
¢þ
>WENV170076243
CDZT01060871
[CDZT] gut metagenome; human stools
7773
7848
+
Phe
GAA
[ENA]
¢þ
>WENV170078125
CDZV01010653
[CDZV] gut metagenome; human stools
13802
13727
-
Phe
GAA
[ENA]
¢þ
>WENV170093876
CEAH01043191
[CEAH] gut metagenome; human stools
4482
4557
+
Phe
GAA
[ENA]
¢þ
>C191000246
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
3053644
3053719
+
Phe
GAA
-
¡û
>C191045044
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
1062840
1062915
+
Phe
GAA
-
¡û
>C191149672
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
275437
275512
+
Phe
GAA
-
¡û
>W09100672
AABN02000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
335029
334954
-
Phe
GAA
[ENA]
¡û
>W09106211
AATW01000002
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
215881
215956
+
Phe
GAA
[ENA]
¡û
>W09112390
ABXU01000082
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
95
170
+
Phe
GAA
[ENA]
¡û
>W09118235
ACCT01000005
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
121631
121556
-
Phe
GAA
[ENA]
¡û
>W09134082
ACQX01000017
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
48185
48110
-
Phe
GAA
[ENA]
¡û
>W1910020661
BDUJ01000002
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
171439
171514
+
Phe
GAA
[ENA]
¡û
>W1910182256
BJMT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
170572
170497
-
Phe
GAA
[ENA]
¡û
>W1910547842
FZOC01000003
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
277702
277777
+
Phe
GAA
[ENA]
¡û
>C09103872
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
390060
389985
-
Phe
GAA
[Ensembl]
¡û
>C09104116
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
3900101
3900026
-
Phe
GAA
[Ensembl]
¡û
>C09104404
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
3076869
3076794
-
Phe
GAA
[Ensembl]
¡û
>W1810792934
QRJJ01000008
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
79986
79911
-
Phe
GAA
[ENA]
¡û
>C11107457
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
3426112
3426037
-
Phe
GAA
[Ensembl]
¡û
>W11107009
ACWM01000050
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
41798
41873
+
Phe
GAA
[ENA]
¡û
>W1511365650
JSEH01000027
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
17677
17752
+
Phe
GAA
[ENA]
¡û
>W11178834
AGFG01000058
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
27289
27214
-
Phe
GAA
[ENA]
¡û
>W1710515601
FNBX01000009
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
17973
18048
+
Phe
GAA
[ENA]
¡û
>W1710579852
FPIW01000010
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
32531
32456
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK