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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302258 (74 seq.)
>A171003508
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
190660
190587
-
Asp
GTC
-
¡û
>A171006181
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
475547
475474
-
Asp
GTC
-
¡û
>A171006236
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
294273
294200
-
Asp
GTC
-
¡û
>A171006237
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
294170
294098
-
Asp
GTC
-
¡û
>A171006906
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
670930
671002
+
Asp
GTC
-
¡û
>A171007019
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1034128
1034056
-
Asp
GTC
-
¡û
>A171007020
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1032082
1032009
-
Asp
GTC
-
¡û
>A171007154
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2551464
2551536
+
Asp
GTC
-
¡û
>WENV180318251
OBKM01000187
[OBKM] metagenome; water
17419
17491
+
Asp
GTC
[ENA]
¢þ
>WENV180318274
OBKM01000258
[OBKM] metagenome; water
20430
20355
-
Asp
GTC
[ENA]
¢þ
>WENV170008767
APHM01004989
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
321
394
+
Asp
GTC
[ENA]
¢þ
>WENV170008831
APHM01009061
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
453
525
+
Asp
GTC
[ENA]
¢þ
>WENV170008832
APHM01009061
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
539
613
+
Asp
GTC
[ENA]
¢þ
>WENV170009146
APHM01021449
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
27508
27581
+
Asp
GTC
[ENA]
¢þ
>WENV170009175
APHM01021493
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
290356
290283
-
Asp
GTC
[ENA]
¢þ
>At0859
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2357258
2357330
+
Asp
GTC
[Ensembl]
¡û
>WENV170659869
JXWS01020117
[JXWS] soil metagenome; rice field; elevated CO2
174
246
+
Asp
GTC
[ENA]
¢þ
>WENV170659870
JXWS01020117
[JXWS] soil metagenome; rice field; elevated CO2
260
334
+
Asp
GTC
[ENA]
¢þ
>WENV170659940
JXWS01049049
[JXWS] soil metagenome; rice field; elevated CO2
412
338
-
Asp
GTC
[ENA]
¢þ
>WENV170679597
LFCJ01000064
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
39893
39966
+
Asp
GTC
[ENA]
¢þ
>WENV170680116
LFCJ01004343
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1401
1473
+
Asp
GTC
[ENA]
¢þ
>WENV170680117
LFCJ01004343
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1807
1881
+
Asp
GTC
[ENA]
¢þ
>WENV170680181
LFCJ01005367
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
913
841
-
Asp
GTC
[ENA]
¢þ
>WENV170680182
LFCJ01005367
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
686
614
-
Asp
GTC
[ENA]
¢þ
>WENV170680422
LFCJ01011220
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
74
2
-
Asp
GTC
[ENA]
¢þ
>WENV170681522
LFFM01001207
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1401
1473
+
Asp
GTC
[ENA]
¢þ
>WENV170681599
LFFM01001600
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13029
13102
+
Asp
GTC
[ENA]
¢þ
>WENV170703150
LKMJ01007242
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5527
5600
+
Asp
GTC
[ENA]
¢þ
>WENV170703163
LKMJ01007379
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1401
1473
+
Asp
GTC
[ENA]
¢þ
>WENV170703451
LKMJ01011869
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5718
5790
+
Asp
GTC
[ENA]
¢þ
>WENV170703452
LKMJ01011869
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6203
6276
+
Asp
GTC
[ENA]
¢þ
>WENV170703507
LKMJ01012821
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1903
1830
-
Asp
GTC
[ENA]
¢þ
>WENV170703868
LKMJ01017754
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4010
3937
-
Asp
GTC
[ENA]
¢þ
>W1910006686
BBJO01000003
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
158739
158812
+
Asp
GTC
[ENA]
¡û
>W1910226693
FMZP01000010
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
87454
87381
-
Asp
GTC
[ENA]
¡û
>W1910226694
FMZP01000010
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
87012
86939
-
Asp
GTC
[ENA]
¡û
>W1910228589
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
1004229
1004302
+
Asp
GTC
[ENA]
¡û
>W1910228590
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
1004324
1004397
+
Asp
GTC
[ENA]
¡û
>W1910229914
FOIC01000011
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
28088
28161
+
Asp
GTC
[ENA]
¡û
>W1911580807
PEND01000002
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
411473
411546
+
Asp
GTC
[ENA]
¡û
>W1911709549
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
385716
385643
-
Asp
GTC
[ENA]
¡û
>W1911709550
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
385614
385542
-
Asp
GTC
[ENA]
¡û
>W1911717774
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1357016
1356944
-
Asp
GTC
[ENA]
¡û
>W1911717775
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1356220
1356148
-
Asp
GTC
[ENA]
¡û
>W1911824343
QZWE01000012
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
81655
81582
-
Asp
GTC
[ENA]
¡û
>W1610001043
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
328783
328711
-
Asp
GTC
[ENA]
¡û
>W1610001044
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
328177
328104
-
Asp
GTC
[ENA]
¡û
>W1610004046
AGFZ01000017
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
8742
8670
-
Asp
GTC
[ENA]
¡û
>W1610011830
AOHU01000102
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
49817
49890
+
Asp
GTC
[ENA]
¡û
>W1610011831
AOHU01000102
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
49919
49991
+
Asp
GTC
[ENA]
¡û
>W1610012499
AOIN01000008
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
218431
218503
+
Asp
GTC
[ENA]
¡û
>W1610012500
AOIN01000008
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
219232
219305
+
Asp
GTC
[ENA]
¡û
>W1610012600
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
154062
154134
+
Asp
GTC
[ENA]
¡û
>W1610012636
AOIQ01000009
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
174673
174746
+
Asp
GTC
[ENA]
¡û
>W1610012761
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
16630
16557
-
Asp
GTC
[ENA]
¡û
>W1610013590
AOLF01000035
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
19294
19221
-
Asp
GTC
[ENA]
¡û
>W1610013591
AOLF01000035
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
19192
19119
-
Asp
GTC
[ENA]
¡û
>W1610013605
AOLG01000008
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
374792
374719
-
Asp
GTC
[ENA]
¡û
>W1610013606
AOLG01000008
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
374690
374618
-
Asp
GTC
[ENA]
¡û
>W1610013688
AOLH01000025
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
197896
197969
+
Asp
GTC
[ENA]
¡û
>W1610013689
AOLH01000025
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
197998
198071
+
Asp
GTC
[ENA]
¡û
>W1610013876
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
52353
52426
+
Asp
GTC
[ENA]
¡û
>W1610013877
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
52455
52528
+
Asp
GTC
[ENA]
¡û
>W1610013878
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
52545
52618
+
Asp
GTC
[ENA]
¡û
>W1610014598
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
331544
331617
+
Asp
GTC
[ENA]
¡û
>W1610014641
AOME01000076
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
139536
139609
+
Asp
GTC
[ENA]
¡û
>W1610019107
ARPX01000203
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
27470
27543
+
Asp
GTC
[ENA]
¡û
>W1610019131
ARPY01000161
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
56837
56910
+
Asp
GTC
[ENA]
¡û
>W1610019171
ARPZ01000092
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
6655
6727
+
Asp
GTC
[ENA]
¡û
>W1610019172
ARPZ01000092
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
6741
6815
+
Asp
GTC
[ENA]
¡û
>W1610040543
BAFM01000007
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
151748
151675
-
Asp
GTC
[ENA]
¡û
>W1610682296
LKMR01000037
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
5527
5600
+
Asp
GTC
[ENA]
¡û
>W1610682622
LKNF01000036
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
13029
13102
+
Asp
GTC
[ENA]
¡û
>W1610799780
LOPU01000016
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
200058
200131
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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