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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302261 (13 seq.)
>C019104
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
194189
194265
+
Ile
GAT
[Ensembl]
¡û
>C019112
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
913057
913133
+
Ile
GAT
[Ensembl]
¡û
>C019135
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
3810513
3810437
-
Ile
GAT
[Ensembl]
¡û
>C019144
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
2735465
2735389
-
Ile
GAT
[Ensembl]
¡û
>w001374
AAAG02000010
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
2394
2470
+
Ile
GAT
[ENA]
¡û
>w001334
AAAG02000001
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
1073572
1073499
-
Ile
GAT
[ENA]
¡û
>C11118816
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
194189
194265
+
Ile
GAT
[Ensembl]
¡û
>C11118825
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
913057
913133
+
Ile
GAT
[Ensembl]
¡û
>C11118849
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
3810513
3810437
-
Ile
GAT
[Ensembl]
¡û
>C11118859
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
2735465
2735389
-
Ile
GAT
[Ensembl]
¡û
>WENV078213
AAFZ01008290
Fossil microbial community from Whale Fall (Santa Cruz Basin)
119
43
-
Ile
GAT
[ENA]
>W1710522550
FNHG01000020
Alphaproteobacteria
Maricaulis salignorans [FNHG]
2299
2375
+
Ile
GAT
[ENA]
¡û
>W1710593796
FRXO01000020
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
3503
3427
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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