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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302263 (17 seq.)
>A171000016
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1585878
1585951
+
His
GTG
-
¡û
>A171004429
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
147590
147516
-
His
GTG
-
¡û
>A171006187
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
147591
147517
-
His
GTG
-
¡û
>A171007448
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
2220125
2220198
+
His
GTG
-
¡û
>WENV180273627
OBEU01001799
[OBEU] marine metagenome; marine
841
915
+
His
GTG
[ENA]
¢þ
>WENV180318432
OBKM01000834
[OBKM] metagenome; water
5132
5059
-
His
GTG
[ENA]
¢þ
>WENV170008787
APHM01005912
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1236
1309
+
His
GTG
[ENA]
¢þ
>WENV170008919
APHM01015587
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
3620
3693
+
His
GTG
[ENA]
¢þ
>WENV170009085
APHM01021224
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1550
1623
+
His
GTG
[ENA]
¢þ
>At0811
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1596638
1596710
+
His
GTG
[Ensembl]
¡û
>W1910230030
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1996663
1996590
-
His
GTG
[ENA]
¡û
>W1911682359
QKNY01000013
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
187001
187074
+
His
GTG
[ENA]
¡û
>W1911696483
QMDW01000020
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
34741
34814
+
His
GTG
[ENA]
¡û
>W1610003613
AGCX01000264
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
3704
3777
+
Pseudo
GTG
[ENA]
¡û
>W1610019193
ARPZ01000562
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
2635
2708
+
Pseudo
GTG
[ENA]
¡û
>W1610019202
ARQA01000222
Euryarchaeota
Halonotius sp. J07HN6 [ARQA]
9397
9470
+
Pseudo
GTG
[ENA]
¡û
>W1610061868
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
2260904
2260978
+
Pseudo
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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