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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302366 (18 seq.)
>W1710900532
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
1397845
1397917
+
Lys
CTT
[ENA]
¡û
>W1710920507
LNYQ01000013
Gammaproteobacteria
Legionella parisiensis [LNYQ]
708698
708773
+
Lys
CTT
[ENA]
¡û
>W1710920654
LNYU01000003
Gammaproteobacteria
Legionella santicrucis [LNYU]
9350
9426
+
Lys
CTT
[ENA]
¡û
>W1710920846
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
1661593
1661517
-
Lys
CTT
[ENA]
¡û
>W1710920918
LNZA01000001
Gammaproteobacteria
Legionella tucsonensis [LNZA]
2249520
2249445
-
Lys
CTT
[ENA]
¡û
>W1711079681
LSOG01000016
Gammaproteobacteria
Legionella parisiensis [LSOG]
624
549
-
Lys
CTT
[ENA]
¡û
>C181117900
CP025491
Gammaproteobacteria
Legionella sainthelensi LA01-117 [CP025491]
3984680
3984605
-
Lys
CTT
-
¡û
>C191198873
LR134173
Gammaproteobacteria
Legionella cherrii NCTC11976 [LR134173]
3269561
3269489
-
Lys
CTT
-
¡û
>C191204113
LR134286
Gammaproteobacteria
Legionella oakridgensis NCTC11531 [LR134286]
2889517
2889442
-
Lys
CTT
-
¡û
>C191210098
LR134388
Gammaproteobacteria
Legionella sainthelensi NCTC11988 [LR134388]
1434563
1434637
+
Lys
CTT
-
¡û
>W141560455
JHXP01000016
Gammaproteobacteria
Legionella sainthelensi ATCC 35248 [JHXP]
65374
65300
-
Lys
CTT
[ENA]
¡û
>C151103381
LN614827
Gammaproteobacteria
Legionella fallonii LLAP-10 [LN614827]
835302
835377
+
Lys
CTT
[Ensembl]
¡û
>WENV058192
AACY023320678
Marine microbial communities from Global Ocean Sampling (GOS)
368
445
+
Lys
CTT
[ENA]
>W1610760519
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
1397845
1397917
+
Lys
CTT
[ENA]
¡û
>W1610778405
LNYQ01000013
Gammaproteobacteria
Legionella parisiensis [LNYQ]
708698
708773
+
Lys
CTT
[ENA]
¡û
>W1610778552
LNYU01000003
Gammaproteobacteria
Legionella santicrucis [LNYU]
9350
9426
+
Lys
CTT
[ENA]
¡û
>W1610778744
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
1661593
1661517
-
Lys
CTT
[ENA]
¡û
>W1610778816
LNZA01000001
Gammaproteobacteria
Legionella tucsonensis [LNZA]
2249520
2249445
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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