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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302379 (59 seq.)
>W1711069011
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1505
1579
+
His
GTG
[ENA]
¡û
>W1711484756
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
1426
1500
+
His
GTG
[ENA]
¡û
>W1711484809
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
17504
17430
-
His
GTG
[ENA]
¡û
>W1711485009
MKDI01000009
Bacillota
Latilactobacillus sakei [MKDI]
25983
25909
-
His
GTG
[ENA]
¡û
>W1711487525
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
1459
1533
+
His
GTG
[ENA]
¡û
>W1711799768
MXAL01000011
Bacillota
Companilactobacillus kimchii paralimentarius [MXAL]
126176
126102
-
His
GTG
[ENA]
¡û
>W1711853602
MYFM01000007
Bacillota
Companilactobacillus bobalius paralimentarius [MYFM]
2379
2453
+
His
GTG
[ENA]
¡û
>C171092224
CP019323
Bacillota
Companilactobacillus allii WiKim39 [CP019323]
2501079
2501006
-
His
GTG
-
¡û
>W141228374
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
26164
26090
-
His
GTG
[ENA]
¡û
>W141229000
BAMH01000161
Bacillota
Companilactobacillus paralimentarius DSM 13238 = JCM 10415 [BAMH]
2299
2373
+
His
GTG
[ENA]
¡û
>W141229269
BAMN01000014
Bacillota
Companilactobacillus nodensis JCM 14932 [BAMN]
2131
2204
+
His
GTG
[ENA]
¡û
>C181003708
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1453357
1453283
-
His
GTG
-
¡û
>C181033644
CP018867
Bacillota
Companilactobacillus alimentarius DSM 20249 [CP018867]
59032
59106
+
His
GTG
-
¡û
>C181071479
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
5347
5421
+
His
GTG
-
¡û
>C181102765
CP024610
Bacillota
Lactobacillus terrae NIBRBAC000499792 [CP024610]
1326205
1326132
-
His
GTG
-
¡û
>C181113658
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1327286
1327360
+
His
GTG
-
¡û
>C181114116
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
639391
639317
-
His
GTG
-
¡û
>C181227426
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
473386
473460
+
His
GTG
-
¡û
>C181227545
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
484741
484815
+
His
GTG
-
¡û
>C181227667
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473749
473823
+
His
GTG
-
¡û
>C191092634
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
835832
835906
+
His
GTG
-
¡û
>W1910176766
BJDF01000022
Bacillota
Companilactobacillus huachuanensis 395-6.2 [BJDF]
2365
2438
+
His
GTG
[ENA]
¡û
>W1910177587
BJDV01000019
Bacillota
Companilactobacillus heilongjiangensis S4-3 [BJDV]
13979
13906
-
His
GTG
[ENA]
¡û
>W1910180957
BJLN01000019
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
26175
26101
-
His
GTG
[ENA]
¡û
>W1910752014
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26208
26134
-
His
GTG
[ENA]
¡û
>W1910753061
MKGH01000042
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
25222
25148
-
His
GTG
[ENA]
¡û
>W1911493464
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
1504
1578
+
His
GTG
[ENA]
¡û
>W1911706073
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
26156
26082
-
His
GTG
[ENA]
¡û
>C151089944
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
871749
871676
-
His
GTG
[Ensembl]
¡û
>C151095660
CP012559
Bacillota
Companilactobacillus heilongjiangensis DSM 28069 [CP012559]
648916
648989
+
His
GTG
-
¡û
>WENV11100312
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
1406
1480
+
His
GTG
[ENA]
¡û
>W1511344713
JRFY01000045
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
322
396
+
His
GTG
[ENA]
¡û
>W1511509487
JXRB02000023
Bacillota
Companilactobacillus heilongjiangensis DSM 28069 [JXRB]
15468
15395
-
His
GTG
[ENA]
¡û
>W1610031750
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19470
19396
-
His
GTG
[ENA]
¡û
>W1610033899
AZDH01000026
Bacillota
Companilactobacillus kimchii DSM 13961 = JCM 10707 [AZDH]
2148
2222
+
His
GTG
[ENA]
¡û
>W1610034168
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
26159
26085
-
His
GTG
[ENA]
¡û
>W1610034339
AZDQ01000046
Bacillota
Companilactobacillus alimentarius DSM 20249 [AZDQ]
2321
2395
+
His
GTG
[ENA]
¡û
>W1610034731
AZDY01000036
Bacillota
Companilactobacillus bobalius DSM 19674 [AZDY]
2219
2293
+
His
GTG
[ENA]
¡û
>W1610034801
AZDZ01000022
Bacillota
Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 [AZDZ]
319669
319596
-
His
GTG
[ENA]
¡û
>W1610034922
AZEC01000027
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
121
194
+
His
GTG
[ENA]
¡û
>W1610035746
AZES01000153
Bacillota
Companilactobacillus paralimentarius DSM 13238 = JCM 10415 [AZES]
2326
2400
+
His
GTG
[ENA]
¡û
>W1610036079
AZEZ01000102
Bacillota
Companilactobacillus mindensis DSM 14500 [AZEZ]
2223
2296
+
His
GTG
[ENA]
¡û
>W1610037183
AZFV01000061
Bacillota
Companilactobacillus nantensis DSM 16982 [AZFV]
1552
1479
-
His
GTG
[ENA]
¡û
>W1610043984
BBAE01000009
Bacillota
Companilactobacillus kimchii DSM 13961 = JCM 10707 [BBAE]
126005
125931
-
His
GTG
[ENA]
¡û
>W1610073784
BCWC01000004
Bacillota
Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 [BCWC]
289468
289395
-
His
GTG
[ENA]
¡û
>W1610529626
JQCF01000020
Bacillota
Companilactobacillus kimchiensis [JQCF]
42751
42678
-
His
GTG
[ENA]
¡û
>W1610909581
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1505
1579
+
His
GTG
[ENA]
¡û
>W1710028677
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19470
19396
-
His
GTG
[ENA]
¡û
>W1710031026
AZDH01000026
Bacillota
Companilactobacillus kimchii DSM 13961 = JCM 10707 [AZDH]
2148
2222
+
His
GTG
[ENA]
¡û
>W1710031466
AZDQ01000046
Bacillota
Companilactobacillus alimentarius DSM 20249 [AZDQ]
2321
2395
+
His
GTG
[ENA]
¡û
>W1710031858
AZDY01000036
Bacillota
Companilactobacillus bobalius DSM 19674 [AZDY]
2219
2293
+
His
GTG
[ENA]
¡û
>W1710031928
AZDZ01000022
Bacillota
Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 [AZDZ]
319669
319596
-
His
GTG
[ENA]
¡û
>W1710032049
AZEC01000027
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
121
194
+
His
GTG
[ENA]
¡û
>W1710032785
AZES01000153
Bacillota
Companilactobacillus paralimentarius DSM 13238 = JCM 10415 [AZES]
2326
2400
+
His
GTG
[ENA]
¡û
>W1710033118
AZEZ01000102
Bacillota
Companilactobacillus mindensis DSM 14500 [AZEZ]
2223
2296
+
His
GTG
[ENA]
¡û
>W1710034222
AZFV01000061
Bacillota
Companilactobacillus nantensis DSM 16982 [AZFV]
1552
1479
-
His
GTG
[ENA]
¡û
>W1710041144
BBAE01000009
Bacillota
Companilactobacillus kimchii DSM 13961 = JCM 10707 [BBAE]
126005
125931
-
His
GTG
[ENA]
¡û
>W1710070902
BCWC01000004
Bacillota
Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 [BCWC]
289468
289395
-
His
GTG
[ENA]
¡û
>W1710631216
JQCF01000020
Bacillota
Companilactobacillus kimchiensis [JQCF]
42751
42678
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK